EMBOSS

| PROTEIN MOTIFS

Protein motif searches

Program name | Description
--- | ---
antigenic | Find antigenic sites in proteins
epestfind | Find PEST motifs as potential proteolytic cleavage sites
fuzzpro | Search for patterns in protein sequences
fuzztran | Search for patterns in protein sequences (translated)
patmatdb | Search protein sequences with a sequence motif
patmatmotifs | Scan a protein sequence with motifs from the PROSITE database
preg | Regular expression search of protein sequence(s)
pscan | Scan protein sequence(s) with fingerprints from the PRINTS database
sigcleave | Report on signal cleavage sites in a protein sequence
elipop | Predict lipoproteins
eiprscan | Motif detection
omeme | Motif detection
emast | Motif detection
ememe | Multiple EM for motif elicitation
ememetext | Multiple EM for motif elicitation, text file only