EMBOSS

| PROTEIN PROFILES

Protein profile generation and searching

Program name | Description
--- | ---
profit | Scan one or more sequences with a simple frequency matrix
prophecy | Create frequency matrix or profile from a multiple alignment
prophet | Scan one or more sequences with a Gribskov or Henikoff profile
seqsearch | Generate PSI-BLAST hits (DHF file) from a DAF file
siggen | Generate a sparse protein signature from an alignment
siggenlig | Generate ligand-binding signatures from a CON file
sigscan | Generate hits (DHF file) from a signature search
sigscanlig | Search ligand-signature library and writes hits (LHF file)