## Utilities / Statistics for primers/adaptors

### Description

Prints the number of tag sequences matching for different numbers of mismatches.

### Parameters

- Input type (FASTQ, FASTA) [FASTQ]
- Tag sequence at 3'-end (String) [-]
- Tag sequence at 5'-end (String) [-]

### Details

Prints the number of tag (i.e. primer/adapter) sequences matching for different numbers of mismatches.

Input can be a FASTQ file or a FASTA file.

No trimming will be performed.

### Output

The output is a tab-delimited text file.

### References

This tool uses the TagCleaner package. Please cite the article:

Schmieder R, Lim YW, Rohwer F, Edwards R, 2010. TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets. BMC Bioinformatics. 2010, 11:341.

Please see the TagCleaner homepage for more details.