\section{pfamhmmer1db}
\label{module_pfamhmmer1db}
This module contains the following objects

\begin{itemize}
\item \ref{object_PfamHmmer1DB} PfamHmmer1DB

\item \ref{object_PfamHmmer1Entry} PfamHmmer1Entry

\end{itemize}
\subsection{Object PfamHmmer1DB}

\label{object_PfamHmmer1DB}

The PfamHmmer1DB object has the following fields. To see how to access them refer to \ref{accessing_fields}
\begin{description}
\item{en} Type [PfamHmmer1Entry ** : List] No documentation

\item{dirname} Type [char * : Scalar]  directory name with the models

\item{cur} Type [int : Scalar] No documentation

\item{def} Type [RandomModel * : Scalar]  default random model

\end{description}


Pfam Hmmer1db is a wrapper around a Pfam Hmmer database.  This is file
called HMM.s in a directory which has appropiate .HMM and .random
files


Although this DB will be phased out, it is still around for a while.


This wont be used directly, but rather in a threestatedb model. 
It does not implement a full dynamite style db stream. rather it expects
threestatedb to prod it in the correct manner.






Member functions of PfamHmmer1DB

\subsection{Object PfamHmmer1Entry}

\label{object_PfamHmmer1Entry}

The PfamHmmer1Entry object has the following fields. To see how to access them refer to \ref{accessing_fields}
\begin{description}
\item{entryname} Type [char * : Scalar] No documentation

\item{is_random} Type [boolean : Scalar] No documentation

\item{is_hmmls} Type [boolean : Scalar] No documentation

\item{bits_cutoff} Type [double : Scalar] No documentation

\end{description}
No documentation for PfamHmmer1Entry

Member functions of PfamHmmer1Entry

