[1] Summary of MotIV analysis
[1] 
	Number of input motifs :  4 
	Input motifs names :  motif 1 motif 2 motif 3 motif 4 
	Number of matches per motif:  10 
	Matches repartition : 
       Stat3          AP1       ARID3A Ddit3::Cebpa         Evi1          FEV 
           2            1            1            1            1            1 
       FOXA1        Foxa2        Foxd3        FOXF2        FOXI1        FOXO3 
           1            1            1            1            1            1 
       Foxq1        HOXA5         IRF1         Klf4         Mafb        MEF2A 
           1            1            1            1            1            1 
         Myf       NFE2L2        NFKB1         Pax4         Pax6        PLAG1 
           1            1            1            1            1            1 
 PPARG::RXRA        Prrx2          REL         RELA         REST          SP1 
           1            1            1            1            1            1 
        SPI1         Spz1     Tcfcp2l1       TFAP2A         TP53       Zfp423 
           1            1            1            1            1            1 
         Zfx       znf143      ZNF354C 
           1            1            1 
	Arguments used : 
	  -metric name :  PCC 
	  -alignment :  SWU 

[1] 
[1] 
[1] Consensus sequence
[1] 
[1] "nrGAGGCyGAGGywGsAGn" "nAAAAwAAArAAAAAn"    "wGCTGGGAyyACAGGn"   
[4] "nCCAGGCTGGwGTb"     
[1] 
[1] 
[1] Number of occurrences of consensus sequence for each motif
[1] 
[1] 86 91 47 65
[1] 
[1] 
[1] Alignments of motifs to known TFBS
[1] 
$`motif 1`
       NFE2L2              Zfx                 Klf4               
seq    NCTSCNRCCTCRGCCTCYN NRGAGGCYGAGGYNGSAGN NCTSCNRCCTCRGCCTCYN
match  ----RTGACWNAGCA---- --NAGGCCNNGGCNNN--- ------GCCMCRCCCN---
evalue 7.5511e-04          4.4064e-03          6.7999e-03         
       SP1                 AP1                 PLAG1              
seq    NRGAGGCYGAGGYNGSAGN NRGAGGCYGAGGYNGSAGN NRGAGGCYGAGGYNGSAGN
match  -GGGGGNGGGG-------- -------TGAGTCA----- -GGGGCCNAAGGGGG----
evalue 7.4441e-03          9.8589e-03          3.4281e-02         
       Mafb                Tcfcp2l1            TFAP2A             
seq    NCTSCNRCCTCRGCCTCYN NRGAGGCYGAGGYNGSAGN NRGAGGCYGAGGYNGSAGN
match  ------NNNTCAGC----- --CYGGNTNNRNCYGG--- ----GCCNNNNGS------
evalue 3.6696e-02          3.9869e-02          7.2791e-02         
       PPARG::RXRA        
seq    NCTSCNRCCTCRGCCTCYN
match  ----TGMCCTTTGNCCYNN
evalue 8.0696e-02         

$`motif 2`
       Foxd3            Foxq1            Pax4                          
seq    NTTTTTNTTTNTTTTN NTTTTTNTTTNTTTTN --------------NTTTTTNTTTNTTTTN
match  -NAWTGTTTNTTT--- --NATTGTTTATW--- GKRNNNNKNNNNNNNNNNNKNNWWWTWTTY
evalue 3.7125e-04       9.3816e-04       1.4121e-02                    
       FOXF2             MEF2A            FOXI1            FOXA1           
seq    -NAAAANAAANAAAAAN NAAAANAAANAAAAAN NTTTTTNTTTNTTTTN NAAAANAAANAAAAAN
match  NNANSGTAAACANN--- ----CTATAAATAG-- NNNTRTTTRTWT---- NWRWGYAAACA-----
evalue 1.4839e-02        4.6957e-02       5.2691e-02       8.1026e-02      
       IRF1              Evi1              Foxa2            
seq    -NTTTTTNTTTNTTTTN NAAAANAAANAAAAAN- NTTTTTNTTTNTTTTN-
match  GGTTTCRNTTTN----- ---NAGAYAAGATAANN -----TGTTTACWYWNN
evalue 9.4554e-02        9.7017e-02        9.7243e-02       

$`motif 3`
       Ddit3::Cebpa     Spz1             REL              FOXO3           
seq    NGCTGGGANNACAGGN NCCTGTNNTCCCAGCN NGCTGGGANNACAGGN NGCTGGGANNACAGGN
match  ----GSNATTGCAYNN -GCTGWTACCCT---- ---NGGRNWTTCC--- -----TGTTTACA---
evalue 4.2357e-04       3.1207e-03       4.4511e-03       6.7688e-03      
       NFKB1            RELA             ARID3A           Stat3             
seq    NCCTGTNNTCCCAGCN NCCTGTNNTCCCAGCN NCCTGTNNTCCCAGCN --NCCTGTNNTCCCAGCN
match  --GGGGAATCCCC--- ---GGAAANTCCC--- ---TTTAAT------- CTTCCNGGAA--------
evalue 1.2057e-02       1.5448e-02       1.6346e-02       2.7530e-02        
       Prrx2            HOXA5           
seq    NCCTGTNNTCCCAGCN NGCTGGGANNACAGGN
match  -----TAATT------ ------MATTWNNG--
evalue 3.2104e-02       4.8290e-02      

$`motif 4`
       Pax6           Stat3           Myf            FEV           
seq    NCCAGGCTGGWGTN -NCCAGGCTGGWGTN NACWCCAGCCTGGN NACWCCAGCCTGGN
match  TTCACGCWTSANTK TTCCNGGAAG----- --CAGCAGYTGCYK ----AYTTCCTG--
evalue 2.2115e-03     2.8572e-03      2.1142e-02     3.8423e-02    
       ZNF354C        REST                  SPI1           Zfp423            
seq    NCCAGGCTGGWGTN NACWCCAGCCTGGN------- NACWCCAGCCTGGN NACWCCAGCCTGGN----
match  ------GTGGAK-- NTCAGCACCNNGGACAGCNNC ----ACTTCCT--- ---GNMMCCYTRGGKKSC
evalue 5.1912e-02     7.7198e-02            8.4798e-02     9.0442e-02        
       TP53                    znf143              
seq    NACWCCAGCCTGGN--------- ----NCCAGGCTGGWGTN--
match  ---ACATGCCCGGGCATGTCCNN KCNNKGMANNMTGGGANNNN
evalue 1.4007e-01              1.4312e-01          

[1] 
[1] 
[1] Weighted matrices for each motif
[1] 
$`motif 1`
       1      2      3      4      5      6      7      8      9     10     11
A 0.3488 0.3372 0.0349 0.8023 0.2093 0.0581 0.1047 0.0814 0.1395 0.6977 0.0930
C 0.2326 0.0233 0.0814 0.0349 0.0000 0.0581 0.7093 0.3023 0.0233 0.0116 0.0581
G 0.3256 0.5814 0.8605 0.0930 0.7558 0.8721 0.0698 0.0814 0.7907 0.2093 0.8256
T 0.0930 0.0581 0.0233 0.0698 0.0349 0.0116 0.1163 0.5349 0.0465 0.0814 0.0233
      12     13     14     15     16     17     18     19
A 0.0465 0.0814 0.4419 0.0581 0.1512 0.6860 0.0698 0.1860
C 0.0233 0.5000 0.0349 0.0233 0.2791 0.0814 0.0349 0.1628
G 0.8837 0.0233 0.2442 0.8256 0.5698 0.0698 0.8372 0.4186
T 0.0465 0.3953 0.2791 0.0930 0.0000 0.1628 0.0581 0.2326

$`motif 2`
       1      2      3      4      5      6      7      8      9     10     11
A 0.2967 0.9011 0.9121 0.8022 0.8242 0.4286 0.8462 0.8022 0.9231 0.5495 0.9011
C 0.2418 0.0549 0.0110 0.0769 0.0879 0.0440 0.0549 0.0110 0.0110 0.1648 0.0330
G 0.1538 0.0000 0.0549 0.0220 0.0549 0.2308 0.0000 0.0220 0.0220 0.2308 0.0000
T 0.3077 0.0440 0.0220 0.0989 0.0330 0.2967 0.0989 0.1648 0.0440 0.0549 0.0659
      12     13     14     15     16
A 0.8352 0.8901 0.7582 0.7253 0.3626
C 0.0330 0.0110 0.0110 0.0549 0.1319
G 0.0220 0.0330 0.1099 0.1978 0.2088
T 0.1099 0.0659 0.1209 0.0220 0.2967

$`motif 3`
       1      2      3      4      5      6      7      8      9     10     11
A 0.4043 0.0426 0.0000 0.0426 0.0000 0.1489 0.0851 0.8511 0.0638 0.1702 0.7872
C 0.0426 0.0213 0.8298 0.0638 0.0000 0.0000 0.0000 0.0426 0.2340 0.2128 0.1064
G 0.1702 0.9149 0.1489 0.0000 0.9574 0.7872 0.7872 0.0638 0.2340 0.0426 0.0638
T 0.3830 0.0213 0.0213 0.8936 0.0426 0.0638 0.1277 0.0426 0.4681 0.5745 0.0426
      12     13     14     15     16
A 0.0213 0.9149 0.0000 0.0426 0.2766
C 0.7447 0.0213 0.0000 0.0000 0.2766
G 0.0426 0.0426 0.9149 0.8936 0.1489
T 0.1915 0.0213 0.0851 0.0638 0.2979

$`motif 4`
       1      2      3      4      5      6      7      8      9     10     11
A 0.1875 0.1077 0.0462 0.9385 0.1692 0.0615 0.3077 0.2308 0.0462 0.0308 0.4615
C 0.4688 0.8000 0.8923 0.0000 0.0000 0.0308 0.6769 0.0000 0.0000 0.0769 0.0000
G 0.2031 0.0154 0.0154 0.0308 0.8000 0.9077 0.0000 0.0308 0.9385 0.8769 0.0462
T 0.1406 0.0769 0.0462 0.0308 0.0308 0.0000 0.0154 0.7385 0.0154 0.0154 0.4923
      12     13     14
A 0.0769 0.1385 0.0615
C 0.2923 0.1077 0.3692
G 0.6154 0.0769 0.3231
T 0.0154 0.6769 0.2462

