Package: GenomicRanges
Title: Representation and manipulation of genomic intervals
Description: The ability to efficiently store genomic annotations and
	alignments is playing a central role when it comes to analyze
	high-throughput sequencing data (a.k.a. NGS data). The package
	defines general purpose containers for storing genomic intervals
	as well as more specialized containers for storing alignments
	against a reference genome.
Version: 1.8.13
Author: P. Aboyoun, H. Pages and M. Lawrence
Maintainer: Bioconductor Package Maintainer
        <maintainer@bioconductor.org>
biocViews: Genetics, Sequencing, HighThroughputSequencing, Annotation
Depends: R (>= 2.10), methods, BiocGenerics (>= 0.1.12), IRanges (>=
        1.13.36)
Imports: methods, BiocGenerics, IRanges
LinkingTo: IRanges
Suggests: Rsamtools (>= 1.7.42), BSgenome, rtracklayer,
        GenomicFeatures, EatonEtAlChIPseq (>= 0.0.3), leeBamViews,
        edgeR, DESeq, rtracklayer, org.Sc.sgd.db,
        BSgenome.Scerevisiae.UCSC.sacCer2, DEXSeq, pasilla,
        pasillaBamSubset, VariantAnnotation, RUnit
License: Artistic-2.0
Collate: utils.R cigar-utils.R transcript-utils.R constraint.R
        seqinfo.R strand-utils.R Seqinfo-class.R GenomicRanges-class.R
        GenomicRangesList-class.R GenomicRanges-comparison.R
        GRanges-class.R GRangesList-class.R GappedAlignments-class.R
        GappedAlignmentPairs-class.R SummarizedExperiment-class.R
        coverage-methods.R setops-methods.R findOverlaps-methods.R
        encodeOverlaps-methods.R countGenomicOverlaps.R
        seqlevels-utils.R resolveHits-methods.R summarizeOverlaps.R
        RangesMapping-methods.R RangedData-methods.R
        test_GenomicRanges_package.R zzz.R
Packaged: 2012-08-28 04:28:14 UTC; biocbuild
Built: R 2.15.1; x86_64-unknown-linux-gnu; 2012-09-11 12:38:30 UTC; unix
