Package: genoset
Type: Package
Title: Provides classes similar to ExpressionSet for copy number
        analysis
Version: 1.6.0
Date: 2011-01-15
Author: Peter M. Haverty
Maintainer: Peter M. Haverty <phaverty@gene.com>
Description: Load, manipulate, and plot copynumber and BAF data. GenoSet class
    extends eSet by adding a "locData" slot for a RangedData object from the
    IRanges package. This object contains feature genome location data and
    provides for simple subsetting on genome location. CNSet and BAFSet extend
    GenoSet and require assayData matrices for Copy Number (cn) or Log-R Ratio
    (lrr) and B-Allele Frequency (baf) data. Implements and provides
    convenience functions for processing of copy number and B-Allele Frequency
    data.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 2.10), methods, BiocGenerics (>= 0.1.6), Biobase (>=
        2.15.1), IRanges (>= 1.13.5), bigmemory, GenomicRanges
Imports: methods, BiocGenerics, Biobase, DNAcopy, graphics, IRanges,
        stats, GenomicRanges, Biostrings, BSgenome, bigmemory
Suggests: RUnit
Enhances: parallel, BSgenome.Hsapiens.UCSC.hg19
biocViews: Infrastructure, DataRepresentation, Microarray, SNP,
        CopyNumberVariants
Collate: 'genoset-class.R' 'cnset-class.R' 'bafset-class.R'
        'DataFrame-methods.R' 'bigmat.R' 'test_genoset_package.R'
ByteCompile: TRUE
Packaged: 2012-03-31 06:39:31 UTC; biocbuild
Built: R 2.15.1; x86_64-unknown-linux-gnu; 2012-09-11 12:39:14 UTC; unix
