digraph {
graph [overlap=false]
node [shape=doublecircle];
"Graph" -> "Graph::MSTHeapElem";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::PostAnalysis";
"Eval::Closure" -> "Eval::Closure::Sandbox_212";
"Moose::Meta::Class" -> "Sub::Install";
"base" -> "Bio::IdentifiableI";
"Bio::Tools::GFF" -> "Bio::LocatableSeq";
"Class::MOP::Package" -> "Class::MOP";
"Graph::Attribute" -> "Graph::Attribute";
"Moose::Meta::Method::Meta" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_166";
"Moose::Meta::Role" -> "parent";
"Class::MOP::Method::Meta" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_216";
"Eval::Closure" -> "Eval::Closure::Sandbox_412";
"Heap071::Elem" -> "vars";
"Moose::Meta::TypeCoercion::Union" -> "Exporter";
"Class::MOP::Method::Accessor" -> "Moose::Meta::Attribute";
"Eval::Closure" -> "Eval::Closure::Sandbox_291";
"Eval::Closure" -> "Eval::Closure::Sandbox_109";
"Moose::Meta::Role::Attribute" -> "UNIVERSAL";
"Moose::Meta::Attribute" -> "Moose::Meta::TypeConstraint";
"Moose::Meta::TypeConstraint::Class" -> "B";
"Graph::AdjacencyMap" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_304";
"Moose::Meta::Role" -> "Scalar::Util";
"Moose::Meta::Role::Application::ToClass" -> "strict";
"Moose::Meta::TypeConstraint::Registry" -> "Sub::Exporter";
"Graph::AdjacencyMap::Light" -> "Scalar::Util";
"Bio::Roary::Output::NumberOfGroups" -> "Eval::Closure::Sandbox_281";
"Bio::Roary::ContigsToGeneIDsFromGFF" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_125";
"Bio::Roary::Output::EmblGroups" -> "Moose";
"Graph::AdjacencyMap::Vertex" -> "strict";
"Moose::Meta::TypeConstraint::Parameterized" -> "parent";
"DynaLoader" -> "version";
"Bio::Roary::GroupLabels" -> "Moose";
"Class::MOP::Class" -> "Moose::Meta::Method::Destructor";
"Moose::Role" -> "Sub::Exporter";
"Class::MOP::Method" -> "parent";
"Try::Tiny" -> "Module::Implementation";
"Bio::Root::Root" -> "Exporter";
"IO::Handle" -> "XSLoader";
"Moose::Meta::Role::Application::ToInstance" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_261";
"Bio::Roary::GeneNamesFromGFF" -> "Scalar::Util";
"Bio::Factory::LocationFactoryI" -> "strict";
"Moose::Meta::TypeConstraint::Role" -> "B";
"MRO::Compat" -> "strict";
"Bio::DB::RandomAccessI" -> "base";
"Bio::SeqIO" -> "Bio::Tools::GuessSeqFormat";
"Moose" -> "Moose::Meta::Role::Application::RoleSummation";
"Moose::Meta::Role" -> "Class::MOP::Class";
"Moose::Meta::TypeConstraint::Parameterizable" -> "Moose::Util::TypeConstraints::Builtins";
"Eval::Closure" -> "Eval::Closure::Sandbox_325";
"Moose::Meta::TypeConstraint::Parameterizable" -> "Moose::Meta::TypeConstraint::Parameterizable";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Meta::TypeCoercion::Union";
"Eval::Closure" -> "Eval::Closure::Sandbox_50";
"POSIX" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_44";
"File::Temp::Dir" -> "File::Path";
"Moose::Meta::TypeCoercion::Union" -> "Scalar::Util";
"Moose::Meta::TypeConstraint::Class" -> "strict";
"Graph::AdjacencyMatrix" -> "base";
"Moose::Util" -> "UNIVERSAL";
"Bio::Root::IO" -> "File::Path";
"Moose::Meta::Method::Accessor" -> "Try::Tiny";
"Class::MOP::Class" -> "Class::MOP::Mixin::HasMethods";
"File::Temp" -> "Config";
"Moose" -> "Moose::Meta::Role";
"Class::MOP::Package" -> "Moose::Meta::Role";
"Data::Dumper" -> "bytes";
"Moose::Object" -> "metaclass";
"File::Temp" -> "Errno";
"Moose::Meta::Method::Destructor" -> "UNIVERSAL";
"Bio::Roary::Output::EmblGroups" -> "Bio::Roary::AnalyseGroups";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::CommandLine::RoaryPostAnalysis";
"Class::MOP::Deprecated" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_152";
"Moose::Meta::TypeConstraint::Parameterized" -> "Class::MOP::Class";
"Bio::PrimarySeq" -> "base";
"Bio::Roary::AnnotateGroups" -> "Exporter";
"Moose" -> "Moose::Meta::Role::Application";
"Bio::Tools::GFF" -> "Bio::Seq::SeqFactory";
"Eval::Closure" -> "Eval::Closure::Sandbox_323";
"Moose::Meta::Class" -> "Moose::Meta::TypeConstraint::Parameterized";
"Class::MOP::Mixin::HasMethods" -> "Class::MOP::Class";
"Exporter::Heavy" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_190";
"Bio::SeqUtils" -> "Bio::SeqUtils";
"Graph::Undirected" -> "base";
"Package::Stash" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_292";
"Bio::Roary::Output::EmblGroups" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_362";
"Bio::SeqFeatureI" -> "Bio::DB::InMemoryCache";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Getopt::Long";
"Bio::Roary::SplitGroups" -> "Moose";
"Bio::Roary::GeneNamesFromGFF" -> "Bio::Roary::GeneNamesFromGFF";
"Eval::Closure" -> "Eval::Closure::Sandbox_289";
"Moose" -> "Moose::Meta::Role::Application::ToInstance";
"Graph::AdjacencyMap::Heavy" -> "Graph::AdjacencyMap";
"Eval::Closure" -> "Eval::Closure::Sandbox_303";
"Eval::Closure" -> "Eval::Closure::Sandbox_234";
"Bio::SeqIO" -> "Bio::Factory::FTLocationFactory";
"Moose::Util" -> "Class::MOP";
"Eval::Closure" -> "Eval::Closure::Sandbox_30";
"File::Spec" -> "vars";
"Exception::Class::Base" -> "UNIVERSAL";
"Moose::Util::TypeConstraints::Builtins" -> "warnings";
"Class::Load::XS" -> "strict";
"Devel::StackTrace::Frame" -> "strict";
"Graph::AdjacencyMap" -> "Graph::AdjacencyMap::Light";
"Class::MOP::Method::Wrapped" -> "Exporter";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::Output::NumberOfGroups";
"parent" -> "Class::MOP::Object";
"Eval::Closure" -> "Eval::Closure::Sandbox_122";
"Eval::Closure" -> "Eval::Closure::Sandbox_115";
"Eval::Closure" -> "Eval::Closure::Sandbox_252";
"Bio::Roary::GroupStatistics" -> "Tie::StdHash";
"Class::MOP::Attribute" -> "Class::MOP::Instance";
"Bio::LocatableSeq" -> "vars";
"Eval::Closure" -> "Eval::Closure::Sandbox_168";
"vars" -> "strict";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Meta::Role::Application::ToRole";
"Moose::Meta::TypeCoercion::Union" -> "Class::MOP::Class";
"Devel::OverloadInfo" -> "Package::DeprecationManager";
"Moose::Meta::TypeConstraint::Parameterized" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_207";
"File::Temp::Dir" -> "overload";
"Bio::LocatableSeq" -> "Bio::Location::Fuzzy";
"Bio::Location::Fuzzy" -> "base";
"Data::OptList" -> "Data::OptList";
"Eval::Closure" -> "Eval::Closure::Sandbox_135";
"Eval::Closure" -> "Eval::Closure::Sandbox_237";
"Class::Load" -> "Sub::Install";
"Eval::Closure" -> "Eval::Closure::Sandbox_148";
"Bio::LocatableSeq" -> "strict";
"Moose::Meta::Role::Composite" -> "strict";
"Bio::Roary::OrderGenes" -> "B";
"Eval::Closure" -> "Eval::Closure::Sandbox_143";
"Bio::Roary::Output::EmblGroups" -> "Bio::Roary::Output::EmblGroups";
"Eval::Closure" -> "Eval::Closure::Sandbox_393";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "File::Find::Rule";
"Text::CSV" -> "Text::CSV";
"Eval::Closure" -> "Eval::Closure::Sandbox_145";
"Bio::Roary::Output::NumberOfGroups" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_253";
"Bio::LocationI" -> "Exporter";
"Moose::Util::TypeConstraints" -> "Moose::Util::TypeConstraints";
"Eval::Closure" -> "Eval::Closure::Sandbox_365";
"Moose::Meta::Role::Method" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_308";
"Moose::Meta::TypeConstraint::DuckType" -> "Sub::Exporter";
"Moose::Exporter" -> "Class::MOP::Deprecated";
"Moose::Meta::TypeConstraint::Class" -> "metaclass";
"Eval::Closure" -> "Eval::Closure::Sandbox_134";
"Moose::Meta::Method" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_259";
"Eval::Closure" -> "Eval::Closure::Sandbox_285";
"Bio::Roary::OrderGenes" -> "Bio::Roary::AnalyseGroups";
"parent" -> "Class::MOP";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose";
"Bio::Roary::ContigsToGeneIDsFromGFF" -> "Bio::Roary::ContigsToGeneIDsFromGFF";
"Graph::MSTHeapElem" -> "vars";
"Moose::Meta::Role::Application::RoleSummation" -> "parent";
"Class::MOP::Method::Meta" -> "parent";
"Class::MOP::Method::Constructor" -> "Class::MOP::Class";
"Class::MOP::Mixin::AttributeCore" -> "Class::MOP";
"Bio::Roary::OrderGenes" -> "Class::MOP::Class";
"Moose::Meta::Role" -> "Moose::Util";
"Moose::Meta::Mixin::AttributeCore" -> "Class::MOP::Attribute";
"Text::Glob" -> "constant";
"Module::Runtime" -> "Bio::Roary::CommandLine::Common";
"Devel::StackTrace" -> "overload";
"Moose::Util::TypeConstraints::Builtins" -> "Moose::Util::TypeConstraints";
"Heap071::Elem" -> "strict";
"Bio::SeqI" -> "strict";
"Moose::Meta::TypeConstraint::Parameterizable" -> "UNIVERSAL";
"Data::OptList" -> "DynaLoader";
"B::Deparse" -> "B::Deparse";
"Moose::Meta::Method::Accessor" -> "warnings";
"Module::Implementation" -> "warnings";
"Class::MOP::Mixin::HasMethods" -> "Moose::Meta::Role";
"Eval::Closure" -> "Eval::Closure::Sandbox_293";
"Class::MOP::Method::Accessor" -> "Class::MOP::Class";
"Moose::Meta::TypeConstraint" -> "base";
"Moose::Util" -> "warnings";
"File::Path" -> "Config";
"Eval::Closure" -> "Eval::Closure::Sandbox_355";
"Moose::Meta::Method::Meta" -> "parent";
"Devel::StackTrace" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_162";
"File::Temp::Dir" -> "strict";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Class::MOP::Mixin";
"Class::Load" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_102";
"Eval::Closure" -> "Eval::Closure::Sandbox_425";
"Eval::Closure" -> "Eval::Closure::Sandbox_26";
"parent" -> "Moose::Meta::Method";
"Class::MOP::Object" -> "Class::MOP";
"File::Spec" -> "strict";
"Tie::Hash" -> "warnings::register";
"Bio::RangeI" -> "base";
"Bio::Roary::ParseGFFAnnotationRole" -> "Bio::Roary::GeneNamesFromGFF";
"Moose::Util::TypeConstraints::Builtins" -> "Moose::Util::TypeConstraints::Builtins";
"Graph" -> "AutoLoader";
"IO" -> "strict";
"Bio::Roary::Output::EmblGroups" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_327";
"Eval::Closure" -> "Eval::Closure::Sandbox_419";
"Bio::Location::FuzzyLocationI" -> "strict";
"Moose::Meta::Role::Application::ToClass" -> "Class::MOP::Mixin::HasMethods";
"Eval::Closure" -> "Eval::Closure::Sandbox_284";
"Moose::Util" -> "Moose::Meta::Role";
"Moose::Meta::TypeConstraint::Parameterized" -> "Moose::Util::TypeConstraints";
"Sub::Install" -> "Scalar::Util";
"MRO::Compat" -> "XSLoader";
"Moose::Meta::TypeConstraint::Parameterized" -> "UNIVERSAL";
"Bio::AnnotationCollectionI" -> "strict";
"Moose::Object" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_372";
"Graph::MSTHeapElem" -> "Heap071::Elem";
"Eval::Closure" -> "Eval::Closure::Sandbox_53";
"Moose::Meta::TypeCoercion" -> "Class::MOP::Object";
"Moose::Util::TypeConstraints::Builtins" -> "Moose::Meta::TypeConstraint";
"Class::MOP::Method::Constructor" -> "Moose::Meta::Class";
"Moose::Meta::Method::Constructor" -> "Exporter";
"Devel::OverloadInfo" -> "warnings";
"Moose::Meta::TypeCoercion" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_28";
"Bio::Root::IO" -> "Fcntl";
"Moose::Meta::Method::Augmented" -> "parent";
"Moose" -> "Moose::Meta::Role::Application::ToClass";
"Class::MOP::Mixin::HasMethods" -> "Exporter";
"Moose::Meta::Method" -> "Scalar::Util";
"Moose::Meta::Role::Composite" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_341";
"Class::MOP::Method" -> "Class::MOP::Method::Accessor";
"Class::MOP::Package" -> "Class::MOP::Class";
"Moose::Util::TypeConstraints" -> "Moose::Meta::TypeConstraint::Parameterizable";
"Eval::Closure" -> "Eval::Closure::Sandbox_356";
"metaclass" -> "warnings";
"Exporter::Heavy" -> "UNIVERSAL";
"Bio::Location::WidestCoordPolicy" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_315";
"Moose::Meta::TypeConstraint::Class" -> "Moose::Util::TypeConstraints";
"Eval::Closure" -> "Eval::Closure::Sandbox_142";
"Eval::Closure" -> "Eval::Closure::Sandbox_265";
"Eval::Closure" -> "Eval::Closure::Sandbox_16";
"Moose::Role" -> "strict";
"Moose::Util" -> "Sub::Exporter";
"Graph::AdjacencyMap::Light" -> "Exporter";
"Class::MOP::Class" -> "warnings";
"Class::MOP::Mixin::HasMethods" -> "UNIVERSAL";
"Bio::Roary::PostAnalysis" -> "File::Copy";
"File::Basename" -> "warnings";
"Moose::Meta::TypeConstraint::Role" -> "strict";
"Bio::LocatableSeq" -> "Bio::Location::Simple";
"Eval::Closure" -> "Eval::Closure::Sandbox_151";
"Moose" -> "Class::Load";
"Eval::Closure" -> "Eval::Closure::Sandbox_410";
"Moose::Meta::Role::Application::ToClass" -> "Class::MOP::Class";
"Graph::AdjacencyMap::Light" -> "strict";
"Moose::Meta::TypeConstraint::Union" -> "Moose::Meta::TypeCoercion::Union";
"File::Find::Rule" -> "File::Spec::Unix";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Meta::Role::Method::Required";
"Moose::Util::TypeConstraints::Builtins" -> "strict";
"Moose::Meta::TypeConstraint::Class" -> "Moose::Meta::TypeConstraint::Class";
"Module::Implementation" -> "Exporter";
"Class::MOP::Class" -> "mro";
"Moose::Meta::Class" -> "List::Util";
"Bio::Roary::ClustersRole" -> "Moose::Role";
"Bio::Location::Atomic" -> "base";
"Class::MOP::Method::Constructor" -> "Class::MOP::Method::Generated";
"Package::Stash::XS" -> "strict";
"Moose::Exporter" -> "UNIVERSAL";
"Class::MOP::Mixin::HasMethods" -> "Moose::Meta::Method::Meta";
"Eval::Closure" -> "Eval::Closure::Sandbox_182";
"Bio::Annotation::Collection" -> "Bio::Annotation::TypeManager";
"Eval::Closure" -> "Eval::Closure::Sandbox_417";
"Class::MOP" -> "warnings";
"Class::MOP::Method::Constructor" -> "Class::MOP::Method";
"Moose::Meta::Role::Method::Conflicting" -> "parent";
"File::Temp" -> "strict";
"Moose::Meta::TypeConstraint::Role" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_375";
"SelectSaver" -> "Exporter";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::GroupStatistics";
"Moose" -> "Exporter";
"Module::Implementation" -> "Try::Tiny";
"File::Spec::Unix" -> "vars";
"Eval::Closure" -> "Eval::Closure::Sandbox_7";
"Eval::Closure" -> "Eval::Closure::Sandbox_46";
"Eval::Closure" -> "Eval::Closure::Sandbox_20";
"Eval::Closure" -> "Eval::Closure::Sandbox_33";
"Bio::Roary::Output::NumberOfGroups" -> "List::Util";
"overload" -> "overload";
"Eval::Closure" -> "Eval::Closure::Sandbox_95";
"Moose::Meta::Role::Attribute" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_435";
"Class::MOP::Class" -> "Try::Tiny";
"Eval::Closure" -> "Eval::Closure::Sandbox_331";
"Moose::Util::TypeConstraints" -> "Moose::Meta::TypeConstraint::Role";
"Eval::Closure" -> "Eval::Closure::Sandbox_384";
"Eval::Closure" -> "Eval::Closure::Sandbox_139";
"Eval::Closure" -> "Eval::Closure::Sandbox_385";
"Eval::Closure" -> "Eval::Closure::Sandbox_337";
"Eval::Closure" -> "Eval::Closure::Sandbox_32";
"Bio::Location::FuzzyLocationI" -> "base";
"Class::MOP::Class" -> "Class::MOP::Mixin::HasAttributes";
"File::Temp" -> "UNIVERSAL";
"Class::MOP::MiniTrait" -> "warnings";
"Moose::Meta::TypeConstraint::Registry" -> "Moose::Meta::TypeConstraint";
"Eval::Closure" -> "Sub::Exporter";
"Moose::Meta::TypeConstraint::Parameterized" -> "Moose::Meta::TypeConstraint::Parameterized";
"Package::Stash" -> "warnings";
"Bio::Root::Root" -> "strict";
"Bio::DB::InMemoryCache" -> "base";
"Class::MOP::Method" -> "overload";
"Class::MOP::Method::Inlined" -> "Class::MOP::Package";
"Eval::Closure" -> "Eval::Closure::Sandbox_197";
"Bio::DB::InMemoryCache" -> "strict";
"Class::MOP::Package" -> "parent";
"Moose::Meta::Role::Application::ToInstance" -> "metaclass";
"Clone" -> "vars";
"Eval::Closure" -> "Eval::Closure::Sandbox_428";
"Class::MOP::Class::Immutable::Trait" -> "warnings";
"Moose::Meta::Method::Destructor" -> "parent";
"Moose" -> "mro";
"Bio::Roary::ClustersRole" -> "Moose::Exporter";
"Moose::Meta::TypeConstraint::DuckType" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_189";
"Eval::Closure" -> "Eval::Closure::Sandbox_9";
"Package::Stash::XS" -> "warnings";
"Graph::SPTHeapElem" -> "strict";
"Class::MOP::Class" -> "Moose::Meta::Class";
"Bio::Roary::SplitGroups" -> "UNIVERSAL";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Text::CSV";
"Class::MOP::Method" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_343";
"parent" -> "Class::MOP::Module";
"parent" -> "Class::MOP::Package";
"Try::Tiny" -> "strict";
"Moose::Meta::Role::Application::ToInstance" -> "Class::MOP::Class";
"File::Grep" -> "Exporter";
"Eval::Closure" -> "Exporter";
"Moose::Meta::Role::Application::ToClass" -> "Class::MOP::Mixin::HasAttributes";
"Moose::Meta::Method::Destructor" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_363";
"Eval::Closure" -> "Eval::Closure::Sandbox_104";
"Moose::Deprecated" -> "warnings";
"Moose" -> "Moose::Meta::Role::Application::ToRole";
"base" -> "Bio::DB::SeqI";
"Exporter::Heavy" -> "strict";
"POSIX" -> "warnings";
"Class::MOP::Method::Constructor" -> "Exporter";
"File::Spec::Unix" -> "strict";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Scalar::Util";
"Moose" -> "Class::MOP::Attribute";
"Moose::Meta::TypeConstraint" -> "strict";
"Package::DeprecationManager" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_433";
"Class::MOP::Package" -> "Package::DeprecationManager";
"Moose::Exporter" -> "Sub::Name";
"Moose::Meta::Role::Attribute" -> "Moose::Meta::Attribute";
"B::Deparse" -> "overloading";
"Eval::Closure" -> "Eval::Closure::Sandbox_403";
"Moose::Meta::TypeConstraint::Parameterizable" -> "Exporter";
"Moose::Meta::TypeConstraint" -> "Moose::Meta::TypeConstraint::Class";
"base" -> "base";
"Devel::OverloadInfo" -> "strict";
"Moose" -> "Moose::Meta::Class";
"Moose::Meta::TypeConstraint::Role" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_157";
"List::Util" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_66";
"Eval::Closure" -> "Eval::Closure::Sandbox_86";
"Class::MOP::Package" -> "Exporter";
"Bio::PrimarySeq" -> "strict";
"Moose::Meta::Role::Application::ToInstance" -> "parent";
"Class::MOP::Method::Accessor" -> "strict";
"Bio::SeqUtils" -> "warnings";
"Moose::Object" -> "if";
"Eval::Closure" -> "Eval::Closure::Sandbox_389";
"Eval::Closure" -> "Eval::Closure::Sandbox_263";
"Eval::Closure" -> "Eval::Closure::Sandbox_84";
"Eval::Closure" -> "Eval::Closure::Sandbox_68";
"Bio::Location::CoordinatePolicyI" -> "strict";
"Class::MOP" -> "strict";
"Graph::AdjacencyMap" -> "vars";
"Bio::Roary::AnalyseGroups" -> "Moose";
"Eval::Closure" -> "Eval::Closure::Sandbox_272";
"Class::MOP::Method::Wrapped" -> "Scalar::Util";
"Bio::Roary::Main::RoaryPostAnalysis" -> "Class::MOP::Class";
"Package::DeprecationManager" -> "Sub::Install";
"Bio::Roary::GeneNamesFromGFF" -> "Bio::Roary::ParseGFFAnnotationRole";
"Bio::Tools::CodonTable" -> "vars";
"Bio::AnnotatableI" -> "base";
"Moose::Role" -> "UNIVERSAL";
"Class::MOP::MiniTrait" -> "Class::MOP::Method";
"Eval::Closure" -> "Eval::Closure::Sandbox_300";
"Eval::Closure" -> "Eval::Closure::Sandbox_62";
"Graph::Traversal::DFS" -> "base";
"metaclass" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_415";
"Text::CSV_PP" -> "IO::Handle";
"Eval::Closure" -> "Eval::Closure::Sandbox_4";
"Eval::Closure" -> "Eval::Closure::Sandbox_250";
"Moose::Meta::TypeConstraint" -> "Moose::Meta::TypeConstraint";
"Bio::Roary::Output::GroupsMultifastaNucleotide" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_254";
"Eval::Closure" -> "Eval::Closure::Sandbox_164";
"Moose::Meta::Role::Method::Required" -> "Class::MOP::Class";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "strict";
"IO::Handle" -> "IO";
"Bio::Location::SplitLocationI" -> "Exporter";
"Class::MOP::Class" -> "Class::MOP::Class::Immutable::Class::MOP::Class";
"File::Spec::Unix" -> "File::Spec::Unix";
"Eval::Closure" -> "Eval::Closure::Sandbox_258";
"Class::MOP::Method::Generated" -> "strict";
"Bio::Roary::InflateClusters" -> "Moose";
"Try::Tiny" -> "Sub::Name";
"Class::MOP::Instance" -> "warnings";
"Moose::Exporter" -> "Class::MOP::Mixin";
"Package::DeprecationManager" -> "strict";
"Moose::Meta::Role::Composite" -> "Scalar::Util";
"Moose::Meta::TypeConstraint::DuckType" -> "Exporter";
"Moose::Meta::Role" -> "strict";
"Text::CSV" -> "vars";
"Moose::Meta::Role::Method::Required" -> "metaclass";
"Moose::Meta::Role::Composite" -> "Exporter";
"Moose::Exporter" -> "XSLoader";
"Moose::Meta::Role::Method::Required" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_170";
"Class::MOP::Module" -> "strict";
"Class::MOP::Instance" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_73";
"Moose::Exporter" -> "Class::MOP";
"Devel::OverloadInfo" -> "Sub::Identify";
"Eval::Closure" -> "Eval::Closure::Sandbox_133";
"Moose::Meta::Method::Delegation" -> "Exporter";
"Carp" -> "strict";
"Class::MOP::Instance" -> "Class::MOP::Package";
"Moose::Role" -> "Moose::Util::TypeConstraints";
"Class::MOP::Package" -> "Module::Runtime";
"Moose::Meta::TypeConstraint::Enum" -> "Scalar::Util";
"Class::MOP" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_187";
"Bio::Roary::PostAnalysis" -> "Exporter";
"Bio::Root::Root" -> "Error::Simple";
"Eval::Closure" -> "Eval::Closure::Sandbox_268";
"Moose::Meta::TypeConstraint::Union" -> "UNIVERSAL";
"Moose::Util::TypeConstraints" -> "Moose::Meta::TypeConstraint::Enum";
"Moose::Meta::TypeConstraint::Union" -> "Class::MOP::Class";
"Bio::Roary::Output::NumberOfGroups" -> "UNIVERSAL";
"Bio::Roary::Output::GroupsMultifastasNucleotide" -> "Exporter";
"Bio::Roary::SplitGroups" -> "Eval::Closure::Sandbox_352";
"Class::MOP::Mixin" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_31";
"Eval::Closure" -> "Eval::Closure::Sandbox_235";
"Class::MOP::Object" -> "Class::MOP::Object";
"Class::MOP::Class::Immutable::Class::MOP::Class" -> "Class::MOP::Method::Wrapped";
"Bio::Roary::GroupStatistics" -> "UNIVERSAL";
"Moose::Meta::Role::Attribute" -> "parent";
"base" -> "strict";
"Bio::Tools::CodonTable" -> "Bio::Tools::IUPAC";
"Class::MOP::Mixin" -> "warnings";
"Bio::Roary::OrderGenes" -> "Bio::Roary::OrderGenes";
"Bio::Roary::External::ProteinMuscleAlignmentFromNucleotides" -> "Scalar::Util";
"vars" -> "vars";
"Class::MOP::Method::Constructor" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_205";
"Eval::Closure" -> "Eval::Closure::Sandbox_361";
"Eval::Closure" -> "Eval::Closure::Sandbox_360";
"Bio::Roary::Exceptions" -> "Exception::Class";
"Class::MOP::Mixin::HasOverloads" -> "parent";
"Moose" -> "Class::MOP::Object";
"Eval::Closure" -> "Eval::Closure::Sandbox_105";
"Moose::Meta::Attribute" -> "Moose::Meta::Mixin::AttributeCore";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Meta::TypeCoercion";
"Bio::Tools::IUPAC" -> "strict";
"Bio::Roary::InflateClusters" -> "Bio::Roary::InflateClusters";
"Class::MOP::Attribute" -> "Class::MOP::Class::Immutable::Class::MOP::Class";
"Moose::Meta::Method" -> "warnings";
"Moose::Meta::Role::Method" -> "Scalar::Util";
"Try::Tiny::ScopeGuard" -> "constant";
"Moose::Meta::TypeCoercion" -> "Moose::Meta::Attribute";
"File::Temp" -> "vars";
"Eval::Closure" -> "Eval::Closure::Sandbox_2";
"mro" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_201";
"Eval::Closure" -> "Eval::Closure::Sandbox_286";
"Moose::Meta::Attribute" -> "B";
"Bio::Tools::CodonTable" -> "constant";
"Eval::Closure" -> "Eval::Closure::Sandbox_29";
"FindBin" -> "File::Basename";
"re" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_431";
"Config" -> "vars";
"Bio::Seq::SeqFactory" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_260";
"Class::MOP" -> "Class::MOP::Mixin::AttributeCore";
"Moose::Meta::Class" -> "Class::MOP::Method";
"Eval::Closure" -> "Eval::Closure::Sandbox_314";
"Bio::Roary::SplitGroups" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_274";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::InflateClusters";
"Class::MOP" -> "Exporter";
"Moose::Meta::Class" -> "Moose::Meta::TypeConstraint";
"Class::MOP::Mixin" -> "strict";
"Moose::Meta::TypeConstraint::Role" -> "metaclass";
"Eval::Closure" -> "Eval::Closure::Sandbox_369";
"Eval::Closure" -> "Eval::Closure::Sandbox_368";
"Moose::Meta::Method::Accessor" -> "Exporter";
"Bio::Tools::GuessSeqFormat" -> "strict";
"Bio::Roary::Main::RoaryPostAnalysis" -> "Bio::Roary::CommandLine::RoaryPostAnalysis";
"Moose::Meta::Role::Method" -> "parent";
"Moose::Meta::Attribute" -> "parent";
"Graph::AdjacencyMap" -> "Graph::AdjacencyMap";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::GroupStatistics";
"Bio::Roary::Output::GroupsMultifastaNucleotide" -> "Exporter";
"Data::OptList" -> "Exporter";
"Class::MOP::Method::Wrapped" -> "UNIVERSAL";
"File::Basename" -> "strict";
"Moose::Util" -> "List::Util";
"Moose::Meta::Attribute::Native" -> "Module::Runtime";
"Moose::Meta::TypeConstraint::Enum" -> "Class::MOP::Class";
"Moose::Meta::Role::Application::ToClass" -> "Moose::Meta::Class";
"Bio::Roary::OrderGenes" -> "Eval::Closure::Sandbox_309";
"Eval::Closure" -> "Eval::Closure::Sandbox_196";
"Eval::Closure" -> "Eval::Closure::Sandbox_429";
"Bio::SeqFeatureI" -> "vars";
"Moose::Meta::Class" -> "Scalar::Util";
"Moose" -> "Moose";
"Exporter::Heavy" -> "Carp";
"Eval::Closure" -> "Eval::Closure::Sandbox_82";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::InflateClusters";
"Bio::Roary::GroupStatistics" -> "Scalar::Util";
"parent" -> "Class::MOP::MiniTrait";
"Bio::AnnotationI" -> "base";
"Bio::RangeI" -> "strict";
"Class::MOP::Method::Wrapped" -> "warnings";
"Bio::Seq::SeqBuilder" -> "base";
"File::Path" -> "Cwd";
"Bio::Roary::ParseGFFAnnotationRole" -> "Bio::Roary::ContigsToGeneIDsFromGFF";
"Eval::Closure" -> "Eval::Closure::Sandbox_280";
"Module::Implementation" -> "Try::Tiny::ScopeGuard";
"Moose::Util" -> "Sub::Install";
"Bio::Roary::AnnotateGroups" -> "Bio::Roary::AnnotateGroups";
"Class::MOP::Class" -> "Class::MOP::Method::Constructor";
"Eval::Closure" -> "Eval::Closure::Sandbox_256";
"Text::CSV_PP" -> "Text::CSV_PP";
"Class::MOP::Package" -> "Devel::GlobalDestruction";
"main" -> "Bio::Roary::Main::RoaryPostAnalysis";
"Class::MOP::Mixin::HasAttributes" -> "Class::MOP::Class";
"Bio::Roary::GroupStatistics" -> "Text::CSV_PP";
"constant" -> "strict";
"File::Temp" -> "File::Temp";
"Class::MOP::Mixin::HasMethods" -> "Scalar::Util";
"Moose::Meta::Method::Delegation" -> "Sub::Exporter";
"Cwd" -> "vars";
"Bio::Roary::Exceptions::FileNotFound" -> "base";
"Bio::Tools::GFF" -> "base";
"Class::MOP::Method::Wrapped" -> "Class::MOP::Class:";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "warnings";
"Class::MOP::Method::Accessor" -> "parent";
"Exception::Class" -> "Exporter";
"Config" -> "strict";
"Moose::Meta::Role::Application::ToRole" -> "metaclass";
"Moose::Meta::Class" -> "Moose::Util";
"Moose::Meta::Role::Application" -> "Moose::Meta::Role::Application::ToClass";
"Class::MOP::Method::Generated" -> "Eval::Closure";
"Moose" -> "Moose::Util::TypeConstraints";
"Class::MOP::Mixin::HasMethods" -> "Class::MOP::Method";
"Bio::Roary::ParseGFFAnnotationRole" -> "Moose::Role";
"Bio::Roary::OrderGenes" -> "UNIVERSAL";
"File::Find::Rule" -> "vars";
"Eval::Closure" -> "Eval::Closure::Sandbox_110";
"Bio::Roary::Output::GroupsMultifastasNucleotide" -> "Scalar::Util";
"Moose" -> "Class::MOP::Mixin::HasAttributes";
"Opcode" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_45";
"Eval::Closure" -> "Eval::Closure::Sandbox_39";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Meta::Role";
"Module::Runtime" -> "Bio::Roary::JobRunner::Role";
"Moose::Meta::TypeConstraint::Parameterized" -> "Moose::Meta::TypeConstraint";
"Bio::Tools::IUPAC" -> "base";
"Moose::Meta::Attribute" -> "Class::MOP::Instance";
"Moose" -> "UNIVERSAL";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Eval::Closure::Sandbox_433";
"Graph::AdjacencyMatrix" -> "Graph::BitMatrix";
"Getopt::Long" -> "vars";
"Moose::Meta::Role::Application" -> "Exporter";
"Moose::Meta::Role::Attribute" -> "strict";
"Moose::Meta::Role::Method::Conflicting" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_114";
"Bio::Roary::GroupStatistics" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_243";
"Class::MOP::Mixin::AttributeCore" -> "parent";
"Moose::Util::MetaRole" -> "List::Util";
"Graph::AdjacencyMap" -> "Graph";
"Eval::Closure" -> "Eval::Closure::Sandbox_359";
"Carp" -> "Carp";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::GroupLabels";
"Eval::Closure" -> "Eval::Closure::Sandbox_219";
"Bio::Root::IO" -> "XSLoader";
"Eval::Closure" -> "Eval::Closure::Sandbox_183";
"Class::MOP::Attribute" -> "Class::MOP::Method";
"Bio::Roary::Main::RoaryPostAnalysis" -> "Moose";
"Bio::Root::Root" -> "DynaLoader";
"Eval::Closure" -> "Eval::Closure::Sandbox_279";
"Moose::Role" -> "Moose::Role";
"Bio::Roary::SplitGroups" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_299";
"Devel::OverloadInfo" -> "Package::Stash";
"Eval::Closure" -> "Eval::Closure::Sandbox_204";
"Bio::SeqIO" -> "Bio::Seq::SeqBuilder";
"Bio::Roary::GeneNamesFromGFF" -> "Class::MOP::Class";
"Class::MOP::Method::Meta" -> "Class::MOP::Mixin";
"Try::Tiny" -> "Try::Tiny";
"Class::MOP::Method::Generated" -> "warnings";
"Bio::Tools::GuessSeqFormat" -> "warnings";
"Try::Tiny" -> "Moose::Meta::Method::Destructor";
"Class::MOP::Attribute" -> "Exporter";
"constant" -> "warnings::register";
"Eval::Closure" -> "Eval::Closure::Sandbox_165";
"Class::MOP::Mixin::HasOverloads" -> "overload";
"Module::Implementation" -> "Module::Runtime";
"Moose::Meta::Attribute" -> "UNIVERSAL";
"Class::MOP::Method::Constructor" -> "Try::Tiny";
"Params::Util" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_367";
"Eval::Closure" -> "Eval::Closure::Sandbox_128";
"base" -> "Bio::Factory::LocationFactoryI";
"Eval::Closure" -> "Eval::Closure::Sandbox_238";
"Eval::Closure" -> "Eval::Closure::Sandbox_58";
"Eval::Closure" -> "Eval::Closure::Sandbox_18";
"Moose::Util::TypeConstraints" -> "Moose::Meta::TypeConstraint";
"Moose::Meta::Method::Augmented" -> "Sub::Exporter";
"Moose::Meta::Role::Application::RoleSummation" -> "Exporter";
"Moose::Role" -> "Class::MOP::Package";
"Eval::Closure" -> "Eval::Closure::Sandbox_83";
"Bio::Roary::OrderGenes" -> "Scalar::Util";
"Class::MOP::Class" -> "Class::MOP::Method::Wrapped";
"Eval::Closure" -> "Eval::Closure::Sandbox_94";
"Bio::DescribableI" -> "strict";
"if" -> "if";
"Moose::Meta::TypeConstraint::Parameterized" -> "warnings";
"Bio::Location::Simple" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_43";
"Class::MOP::Mixin::HasAttributes" -> "UNIVERSAL";
"Moose" -> "Moose::Object";
"Graph" -> "List::Util";
"Class::MOP::Method::Accessor" -> "Class::MOP::Method::Generated";
"Eval::Closure" -> "Eval::Closure::Sandbox_198";
"Bio::SeqFeature::Generic" -> "Bio::Annotation::Collection";
"Eval::Closure" -> "Eval::Closure::Sandbox_63";
"Class::MOP::Class" -> "Class::MOP::Package";
"Moose::Meta::TypeConstraint::Class" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_15";
"Bio::Roary::GroupStatistics" -> "Text::CSV";
"Bio::IdentifiableI" -> "base";
"File::Path" -> "UNIVERSAL";
"Module::Runtime" -> "Moose::Meta::Object::Trait";
"Eval::Closure" -> "Eval::Closure::Sandbox_49";
"Error" -> "overload";
"Class::MOP::MiniTrait" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_270";
"Class::MOP::Method" -> "Class::MOP::Method";
"Graph::TransitiveClosure" -> "strict";
"File::Copy" -> "XSLoader";
"Class::MOP::Attribute" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_420";
"Package::DeprecationManager" -> "List::MoreUtils";
"Class::MOP::Package" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_282";
"Eval::Closure" -> "Eval::Closure::Sandbox_288";
"Eval::Closure" -> "Eval::Closure::Sandbox_339";
"base" -> "Bio::RangeI";
"B::Deparse" -> "re";
"Eval::Closure" -> "Eval::Closure::Sandbox_184";
"Eval::Closure" -> "Eval::Closure::Sandbox_401";
"Graph" -> "Heap071::Fibonacci";
"Exception::Class::Base" -> "base";
"Carp" -> "Exporter::Heavy";
"IO::Seekable" -> "strict";
"File::Temp" -> "parent";
"Class::MOP::Attribute" -> "Class::MOP::Method::Accessor";
"Moose::Meta::TypeCoercion::Union" -> "warnings";
"Moose::Meta::Role" -> "Sub::Exporter";
"Try::Tiny" -> "Class::MOP::Class";
"Bio::Root::IO" -> "Symbol";
"Class::MOP::Attribute" -> "Class::MOP::Mixin::HasMethods";
"Heap071::Fibonacci" -> "Heap071::Fibonacci";
"Bio::Factory::SequenceStreamI" -> "base";
"Class::MOP::Mixin::HasMethods" -> "Moose::Meta::Class";
"Text::Glob" -> "strict";
"File::Find::Rule" -> "File::Find";
"Eval::Closure" -> "Eval::Closure::Sandbox_181";
"B::Deparse" -> "Exporter";
"Moose::Meta::TypeConstraint::Parameterizable" -> "Class::MOP::Class";
"Moose::Meta::Role" -> "Moose::Meta::Role::Method::Required";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Meta::Role::Application";
"Class::MOP::Overload" -> "Exporter";
"Error" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_275";
"Moose::Meta::Role::Attribute" -> "Moose::Meta::Role::Attribute";
"Class::MOP::Module" -> "Class::MOP::Package";
"Moose" -> "Module::Runtime";
"base" -> "Bio::AnnotationI";
"Bio::Roary::InflateClusters" -> "Bio::Roary::ClustersRole";
"Bio::Annotation::SimpleValue" -> "base";
"Moose::Object" -> "UNIVERSAL";
"Bio::Roary::SplitGroups" -> "File::Temp";
"IO" -> "Exporter";
"File::Spec::Unix" -> "constant";
"Moose::Meta::Role::Composite" -> "Class::MOP::Class";
"Moose" -> "List::Util";
"Moose::Meta::TypeConstraint::Parameterizable" -> "strict";
"Bio::Factory::LocationFactoryI" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_79";
"Graph::AdjacencyMap::Heavy" -> "Graph::AdjacencyMap::Heavy";
"Moose::Meta::Method::Accessor" -> "Class::MOP::Class";
"Storable" -> "Exporter";
"List::Util" -> "Class::MOP::Mixin::AttributeCore";
"Moose::Meta::TypeConstraint::Enum" -> "strict";
"Class::MOP::Object" -> "strict";
"Bio::Roary::GroupStatistics" -> "Tie::Hash";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::AnalyseGroups";
"Eval::Closure" -> "Eval::Closure::Sandbox_108";
"Moose::Util::TypeConstraints" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_227";
"File::Grep" -> "strict";
"Class::MOP::Attribute" -> "Moose::Meta::Method::Accessor";
"Graph" -> "overload";
"Module::Runtime" -> "Bio::Roary::ParseGFFAnnotationRole";
"Moose::Meta::Role::Application" -> "Scalar::Util";
"Bio::Roary::GroupLabels" -> "Bio::Roary::GroupLabels";
"Bio::DB::InMemoryCache" -> "Bio::Seq";
"Eval::Closure" -> "Eval::Closure::Sandbox_364";
"Moose::Exporter" -> "Class::MOP::Object";
"Eval::Closure" -> "Eval::Closure::Sandbox_158";
"Class::MOP::Class" -> "Class::MOP::Class";
"Bio::Roary::GroupLabels" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_144";
"Class::MOP::Method" -> "Moose::Meta::Role::Method";
"Class::MOP::Method::Accessor" -> "warnings";
"Bio::SeqIO" -> "parent";
"DynaLoader" -> "Sub::Name";
"Class::MOP::Mixin" -> "Module::Runtime";
"Package::Stash::XS" -> "Package::Stash::XS";
"Bio::Roary::ContigsToGeneIDsFromGFF" -> "Eval::Closure::Sandbox_295";
"Graph" -> "utf8";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Eval::Closure::Sandbox_426";
"Eval::Closure" -> "Eval::Closure::Sandbox_1";
"Try::Tiny" -> "Class::MOP::Method::Constructor";
"Moose::Meta::Role::Application" -> "warnings";
"Package::Stash" -> "Package::Stash::XS";
"MRO::Compat" -> "warnings";
"Devel::StackTrace" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_76";
"Eval::Closure" -> "Eval::Closure::Sandbox_127";
"Moose::Meta::Method::Constructor" -> "warnings";
"Moose::Deprecated" -> "strict";
"Devel::OverloadInfo" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_180";
"Class::MOP::Module" -> "Class::MOP::Module";
"Try::Tiny" -> "Exporter";
"Class::MOP" -> "Sub::Install";
"Moose::Util" -> "Data::OptList";
"Error::subs" -> "vars";
"base" -> "Bio::SeqI";
"Bio::SeqAnalysisParserI" -> "strict";
"Moose::Meta::TypeConstraint::Registry" -> "Moose::Meta::TypeConstraint::Registry";
"Eval::Closure" -> "Eval::Closure::Sandbox_267";
"Bio::Roary::Output::EmblGroups" -> "Bio::Roary::AnnotateGroups";
"Class::MOP::Class" -> "Class::MOP::Instance";
"Moose::Meta::Role::Application::ToRole" -> "parent";
"Class::MOP::Method::Meta" -> "Moose::Meta::Role";
"File::Copy" -> "File::Spec::Unix";
"Eval::Closure" -> "Eval::Closure::Sandbox_225";
"Moose::Meta::Attribute" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_199";
"Moose::Meta::Mixin::AttributeCore" -> "strict";
"B::Deparse" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_129";
"Eval::Closure" -> "Eval::Closure::Sandbox_65";
"Moose::Meta::Method::Destructor" -> "Sub::Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_338";
"Class::MOP::Method::Inlined" -> "parent";
"Bio::Annotation::Collection" -> "Bio::Annotation::SimpleValue";
"Sub::Exporter" -> "Sub::Exporter";
"Bio::AnnotationCollectionI" -> "base";
"Bio::Roary::GroupStatistics" -> "POSIX";
"Moose::Meta::TypeConstraint::Parameterizable" -> "Sub::Exporter";
"constant" -> "Internals";
"Moose" -> "Carp";
"Moose::Meta::Role::Application" -> "metaclass";
"Moose::Meta::Attribute" -> "Sub::Exporter";
"Moose::Meta::TypeConstraint" -> "Scalar::Util";
"overload" -> "warnings::register";
"warnings::register" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_317";
"utf8" -> "strict";
"Graph::Traversal" -> "Graph";
"Moose::Role" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_422";
"Bio::Roary::SplitGroups" -> "Cwd";
"Bio::Root::IO" -> "File::Temp";
"Sub::Exporter::Progressive" -> "strict";
"Moose::Meta::Class" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_382";
"Moose::Util::TypeConstraints" -> "Moose::Exporter";
"Moose::Meta::TypeCoercion" -> "Scalar::Util";
"constant" -> "vars";
"Bio::Root::Root" -> "Bio::Root::IO";
"List::Util" -> "Class::MOP::Mixin::HasAttributes";
"Eval::Closure" -> "Eval::Closure::Sandbox_278";
"Eval::Closure" -> "Eval::Closure::Sandbox_119";
"Heap071::Fibonacci" -> "Heap071::Elem";
"DynaLoader" -> "List::MoreUtils";
"Safe" -> "XSLoader";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Eval::Closure::Sandbox_431";
"Class::MOP::Class" -> "Scalar::Util";
"Bio::Range" -> "base";
"Bio::Roary::GroupLabels" -> "UNIVERSAL";
"Moose::Meta::Method::Constructor" -> "strict";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::GroupLabels";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Exporter";
"Bio::AnnotatableI" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_48";
"Eval::Closure" -> "Eval::Closure::Sandbox_224";
"Moose::Exporter" -> "Moose::Util::MetaRole";
"Exception::Class" -> "strict";
"Moose::Meta::TypeConstraint::Union" -> "List::Util";
"Moose::Meta::Method::Destructor" -> "Class::MOP::Method";
"Moose::Meta::Method::Accessor" -> "Class::MOP::Method::Accessor";
"Safe" -> "Opcode";
"Moose::Meta::TypeConstraint::Class" -> "Moose::Meta::TypeConstraint";
"Class::MOP::Class::Immutable::Trait" -> "Module::Runtime";
"Moose::Meta::Role::Attribute" -> "Moose::Meta::Role";
"Class::MOP::Class" -> "Class::MOP::MiniTrait";
"Moose::Meta::Role::Application::ToClass" -> "UNIVERSAL";
"Graph::AdjacencyMap::Vertex" -> "base";
"Safe" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_344";
"Class::MOP::Mixin::HasOverloads" -> "Exporter";
"Moose::Meta::Class" -> "Class::MOP::Mixin::AttributeCore";
"Safe" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_14";
"File::Path" -> "File::Path";
"Moose::Meta::Attribute" -> "Class::MOP::Object";
"Moose::Meta::Attribute" -> "Moose::Meta::TypeConstraint::Parameterized";
"Sub::Name" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_381";
"Graph" -> "vars";
"vars" -> "warnings::register";
"Package::Stash" -> "Module::Implementation";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Meta::Role::Application::ToClass";
"Class::Load" -> "Data::OptList";
"Class::MOP::Method::Accessor" -> "Scalar::Util";
"Class::MOP" -> "MRO::Compat";
"Moose::Role" -> "Moose::Util";
"Class::MOP::Mixin::HasOverloads" -> "strict";
"Moose::Util::MetaRole" -> "Sub::Exporter";
"Exception::Class" -> "Bio::Roary::Exceptions::CouldntWriteToFile";
"Sub::Identify" -> "strict";
"Class::MOP::Mixin::AttributeCore" -> "warnings";
"Moose::Meta::Role::Application::RoleSummation" -> "strict";
"Exception::Class" -> "Bio::Roary::Exceptions::FileNotFound";
"Eval::Closure" -> "Eval::Closure::Sandbox_5";
"Eval::Closure" -> "Eval::Closure::Sandbox_324";
"Eval::Closure" -> "Eval::Closure::Sandbox_283";
"File::Copy" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_161";
"Text::CSV" -> "strict";
"parent" -> "parent";
"Moose" -> "Module::Implementation";
"Class::MOP::Class" -> "Class::MOP::Object";
"Moose::Meta::TypeConstraint::Parameterizable" -> "Moose::Meta::TypeConstraint";
"Bio::Annotation::TypeManager" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_191";
"IO::Handle" -> "IO::Handle";
"Moose::Meta::TypeConstraint::Registry" -> "Exporter";
"Moose::Meta::Role" -> "Exporter";
"Sub::Name" -> "warnings";
"Exception::Class" -> "Exception::Class";
"Graph::SPTHeapElem" -> "Exporter";
"Moose::Meta::TypeConstraint::Registry" -> "UNIVERSAL";
"base" -> "Bio::PrimarySeqI";
"Eval::Closure" -> "Eval::Closure::Sandbox_41";
"re" -> "re";
"Bio::Roary::OrderGenes" -> "Moose";
"Moose::Meta::TypeConstraint::Union" -> "Scalar::Util";
"Graph" -> "Graph::Traversal::DFS";
"parent" -> "Class::MOP::Method";
"Moose::Meta::TypeConstraint::Parameterized" -> "metaclass";
"Moose::Deprecated" -> "UNIVERSAL";
"Bio::PrimarySeqI" -> "base";
"base" -> "Bio::SeqAnalysisParserI";
"Graph::Attribute" -> "strict";
"Class::MOP::Mixin::HasMethods" -> "warnings";
"Class::MOP::Method::Meta" -> "Class::MOP::Method";
"Eval::Closure" -> "Eval::Closure::Sandbox_264";
"Bio::Root::RootI" -> "warnings";
"Class::MOP::Class" -> "Class::MOP::Class::Immutable::Trait";
"Class::MOP::Mixin::HasOverloads" -> "Class::MOP::Package";
"DynaLoader" -> "Config";
"Bio::Roary::OrderGenes" -> "XSLoader";
"Eval::Closure" -> "Eval::Closure::Sandbox_297";
"Class::MOP::Package" -> "warnings";
"Graph::AdjacencyMap::Light" -> "Graph::AdjacencyMap";
"Bio::Roary::InflateClusters" -> "Class::MOP::Class";
"Class::Load" -> "Module::Implementation";
"Eval::Closure" -> "Eval::Closure::Sandbox_241";
"Moose::Meta::Instance" -> "parent";
"Class::MOP::Attribute" -> "Class::MOP::Package";
"Bio::Range" -> "strict";
"Class::MOP::Method::Meta" -> "Scalar::Util";
"Moose::Meta::Class" -> "Class::MOP::Mixin::HasAttributes";
"Eval::Closure" -> "Eval::Closure::Sandbox_312";
"Eval::Closure" -> "Eval::Closure::Sandbox_88";
"Moose::Exporter" -> "Class::MOP::Mixin::HasAttributes";
"Sub::Identify" -> "Exporter";
"Moose::Util::MetaRole" -> "UNIVERSAL";
"Bio::Roary::GroupStatistics" -> "Bio::Roary::AnnotateGroups";
"Moose::Meta::Role::Method::Required" -> "overload";
"Eval::Closure" -> "Eval::Closure::Sandbox_177";
"Moose::Meta::Role::Method::Required" -> "Scalar::Util";
"Sub::Identify" -> "XSLoader";
"Moose::Meta::Role::Application::ToInstance" -> "List::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_255";
"Graph::SPTHeapElem" -> "vars";
"Class::MOP::Attribute" -> "warnings";
"base" -> "Bio::Factory::SequenceFactoryI";
"Moose::Meta::Role" -> "Moose::Meta::Role::Application";
"Graph" -> "Graph::AdjacencyMap";
"Moose::Meta::Role" -> "Moose::Meta::Role";
"Eval::Closure" -> "Eval::Closure::Sandbox_74";
"Bio::Location::Split" -> "base";
"Class::MOP::Mixin::HasAttributes" -> "strict";
"Moose::Meta::Attribute" -> "Class::MOP::Mixin::HasMethods";
"Moose" -> "strict";
"Class::MOP::Mixin::AttributeCore" -> "Exporter";
"Moose::Meta::TypeConstraint::Class" -> "Exporter";
"Bio::SeqAnalysisParserI" -> "base";
"Moose::Meta::TypeConstraint::Class" -> "Class::MOP::Class";
"Class::MOP::Method::Accessor" -> "Try::Tiny";
"Moose::Util" -> "Moose::Util";
"Moose::Meta::Attribute" -> "Class::MOP::Method::Accessor";
"Moose::Meta::Attribute" -> "Moose::Util::TypeConstraints::Builtins";
"Bio::Roary::External::ProteinMuscleAlignmentFromNucleotides" -> "Class::MOP::Class";
"Scalar::Util" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_132";
"Devel::GlobalDestruction" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_397";
"DynaLoader" -> "Clone";
"Moose::Role" -> "Moose::Exporter";
"Module::Runtime" -> "Class::MOP::Class::Immutable::Trait";
"Moose::Meta::Role::Attribute" -> "Sub::Exporter";
"Eval::Closure" -> "Eval::Closure";
"Bio::Roary::PostAnalysis" -> "UNIVERSAL";
"constant" -> "mro";
"Class::MOP::Method" -> "Moose::Meta::Method";
"Eval::Closure" -> "Eval::Closure::Sandbox_330";
"Bio::Tools::GFF" -> "vars";
"base" -> "Bio::Root::Root";
"Heap071::Fibonacci" -> "strict";
"Package::Stash" -> "Package::DeprecationManager";
"Bio::Roary::SplitGroups" -> "File::Basename";
"Eval::Closure" -> "Eval::Closure::Sandbox_60";
"parent" -> "Class::MOP::Mixin";
"Eval::Closure" -> "Eval::Closure::Sandbox_13";
"Moose::Meta::Class" -> "parent";
"Moose::Meta::Role::Application::ToClass" -> "Moose::Meta::Role";
"Sub::Install" -> "Exporter";
"Bio::Roary::ClustersRole" -> "strict";
"Moose::Meta::TypeConstraint::Union" -> "warnings";
"Bio::Root::IO" -> "Carp::Heavy";
"Bio::Roary::CommandLine::Common" -> "Moose";
"Bio::Roary::Exceptions::CouldntWriteToFile" -> "base";
"Moose::Meta::TypeConstraint" -> "metaclass";
"Eval::Closure" -> "Eval::Closure::Sandbox_251";
"Moose::Meta::Role::Application::ToRole" -> "Scalar::Util";
"Devel::StackTrace::Frame" -> "warnings";
"Moose::Meta::TypeConstraint" -> "warnings";
"Moose::Meta::TypeConstraint::Parameterizable" -> "metaclass";
"Moose::Meta::Role::Method" -> "strict";
"warnings" -> "warnings";
"Module::Runtime" -> "Moose";
"Moose::Exporter" -> "Class::MOP::Package";
"Bio::Roary::InflateClusters" -> "UNIVERSAL";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Class::MOP::Class";
"Package::Stash" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_287";
"Moose::Meta::TypeConstraint::DuckType" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_99";
"Eval::Closure" -> "Eval::Closure::Sandbox_276";
"Eval::Closure" -> "Eval::Closure::Sandbox_311";
"Eval::Closure" -> "Eval::Closure::Sandbox_174";
"Moose::Meta::Role::Application::ToInstance" -> "constant";
"Class::MOP::Object" -> "UNIVERSAL";
"Bio::Factory::ObjectBuilderI" -> "Exporter";
"Moose::Meta::Role::Attribute" -> "Class::MOP::Mixin::AttributeCore";
"Moose::Meta::Class::Immutable::Trait" -> "Sub::Exporter";
"Moose::Meta::Role::Application" -> "Class::MOP::Mixin::HasOverloads";
"Moose::Util::TypeConstraints" -> "Moose::Meta::TypeConstraint::Class";
"B::Deparse" -> "vars";
"Moose::Meta::Attribute" -> "Class::MOP::Class::Immutable::Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_222";
"Bio::LocatableSeq" -> "base";
"Graph" -> "Graph";
"Class::MOP::Mixin::HasOverloads" -> "constant";
"metaclass" -> "Class::MOP::Mixin::HasMethods";
"base" -> "Bio::Location::FuzzyLocationI";
"Eval::Closure" -> "Eval::Closure::Sandbox_376";
"File::Copy" -> "warnings";
"Module::Runtime" -> "Bio::Roary::ClustersRole";
"Eval::Closure" -> "Eval::Closure::Sandbox_130";
"Class::MOP::Method" -> "strict";
"base" -> "Bio::PrimarySeq";
"Eval::Closure" -> "Scalar::Util";
"parent" -> "Bio::Factory::SequenceStreamI";
"Eval::Closure" -> "Eval::Closure::Sandbox_169";
"Moose::Meta::Attribute" -> "Moose::Meta::Method::Accessor";
"Eval::Closure" -> "Eval::Closure::Sandbox_358";
"Moose::Meta::Attribute" -> "Class::MOP::Class";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::AnnotateGroups";
"Class::MOP::Attribute" -> "Moose::Meta::Attribute";
"Moose::Meta::Method::Delegation" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_153";
"Bio::SeqIO" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_217";
"Class::MOP::Mixin::AttributeCore" -> "Moose::Meta::Class";
"Opcode" -> "subs";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "File::Temp::Dir";
"Eval::Closure" -> "Eval::Closure::Sandbox_398";
"Eval::Closure" -> "Eval::Closure::Sandbox_175";
"Eval::Closure" -> "Eval::Closure::Sandbox_416";
"Devel::GlobalDestruction" -> "Sub::Exporter::Progressive";
"Class::MOP::Method::Inlined" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_206";
"Bio::Roary::OrderGenes" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_373";
"Moose::Meta::Attribute" -> "Exporter";
"Opcode" -> "strict";
"Class::MOP::Package" -> "Sub::Exporter::Progressive";
"Try::Tiny" -> "Class::MOP::Attribute";
"Class::MOP::Method::Wrapped" -> "parent";
"Class::MOP" -> "Class::MOP::Mixin::HasOverloads";
"Moose" -> "Moose::Meta::Attribute";
"Bio::Roary::GroupStatistics" -> "Bio::Roary::AnalyseGroups";
"Graph::AdjacencyMap::Heavy" -> "Exporter";
"Class::MOP::Mixin::HasOverloads" -> "warnings";
"Moose::Meta::Role" -> "Moose::Meta::Role::Method::Conflicting";
"Bio::SeqUtils" -> "Bio::Range";
"Bio::DB::SeqI" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_96";
"Eval::Closure" -> "Eval::Closure::Sandbox_146";
"Bio::Roary::ClustersRole" -> "Bio::Roary::InflateClusters";
"Eval::Closure" -> "Eval::Closure::Sandbox_388";
"Bio::Roary::SplitGroups" -> "File::Temp::Dir";
"Eval::Closure" -> "Eval::Closure::Sandbox_156";
"Bio::SeqFeature::Generic" -> "Bio::Location::Split";
"Bio::Root::IO" -> "IO::Handle";
"Class::MOP::Method::Accessor" -> "Class::MOP::Method::Accessor";
"DynaLoader" -> "Params::Util";
"Class::Load" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_116";
"Eval::Closure" -> "Eval::Closure::Sandbox_52";
"Text::CSV" -> "Text::CSV_PP";
"Moose::Meta::Role::Application::ToClass" -> "Exporter";
"Moose::Meta::TypeConstraint::Enum" -> "Exporter";
"Bio::DB::SeqI" -> "strict";
"Graph::MSTHeapElem" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_302";
"Graph" -> "Graph::AdjacencyMap::Heavy";
"Graph::Undirected" -> "strict";
"Moose" -> "Moose::Meta::Attribute::Native";
"Sub::Install" -> "Sub::Install";
"Bio::Tools::GFF" -> "Bio::SeqFeature::Generic";
"Eval::Closure" -> "Eval::Closure::Sandbox_231";
"Moose::Meta::Role::Application::ToClass" -> "metaclass";
"Eval::Closure" -> "Eval::Closure::Sandbox_194";
"Moose::Meta::Role::Attribute" -> "Scalar::Util";
"Bio::SeqFeatureI" -> "strict";
"Sub::Exporter" -> "Params::Util";
"Class::Load" -> "Exporter";
"Bio::Annotation::Collection" -> "base";
"Try::Tiny" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_203";
"Bio::Roary::ContigsToGeneIDsFromGFF" -> "Moose";
"Moose::Meta::TypeConstraint::Registry" -> "metaclass";
"Class::MOP::Method::Generated" -> "Sub::Exporter";
"Moose::Meta::Role" -> "Class::MOP";
"Bio::Factory::FTLocationFactory" -> "Bio::Factory::FTLocationFactory";
"Class::MOP::Mixin::HasAttributes" -> "warnings";
"Sub::Exporter" -> "Sub::Install";
"Eval::Closure" -> "Eval::Closure::Sandbox_47";
"Moose::Meta::Method::Constructor" -> "Scalar::Util";
"base" -> "Bio::FeatureHolderI";
"Text::Glob" -> "Exporter";
"Moose::Meta::Role::Application" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_118";
"Exception::Class::Base" -> "Class::Data::Inheritable";
"Moose::Meta::Method::Accessor" -> "Sub::Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_357";
"Eval::Closure" -> "Eval::Closure::Sandbox_295";
"overload" -> "mro";
"Moose::Meta::Method::Accessor" -> "Class::MOP::Attribute";
"Graph::AdjacencyMap::Light" -> "Graph::AdjacencyMap::Light";
"Moose::Meta::TypeCoercion" -> "Moose::Meta::TypeCoercion";
"Moose::Meta::TypeConstraint::Parameterized" -> "Class::MOP::Mixin::HasAttributes";
"Eval::Closure" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_223";
"Eval::Closure" -> "Eval::Closure::Sandbox_426";
"Moose::Meta::TypeConstraint::Parameterized" -> "Sub::Exporter";
"Class::MOP::Method::Inlined" -> "UNIVERSAL";
"Number::Compare" -> "strict";
"Moose::Meta::TypeConstraint::Parameterizable" -> "warnings";
"File::Find" -> "warnings";
"Class::MOP::Method::Wrapped" -> "Class::MOP::Method::Wrapped";
"Class::MOP::Method::Accessor" -> "Class::MOP::Attribute";
"Bio::Location::SplitLocationI" -> "strict";
"IO::Handle" -> "SelectSaver";
"Eval::Closure" -> "Eval::Closure::Sandbox_406";
"Class::MOP::Object" -> "Exporter";
"Class::Load::XS" -> "UNIVERSAL";
"Moose::Meta::Attribute" -> "Moose::Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_352";
"Moose::Meta::Method::Destructor" -> "Moose::Meta::Method::Destructor";
"Eval::Closure" -> "Eval::Closure::Sandbox_371";
"Moose" -> "Class::Load::XS";
"Moose::Meta::TypeConstraint::Role" -> "Moose::Util::TypeConstraints";
"Devel::StackTrace" -> "Exporter";
"Bio::Roary::AnnotateGroups" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_19";
"Module::Runtime" -> "Moose::Role";
"Moose::Meta::Class::Immutable::Trait" -> "warnings";
"Bio::Tools::IUPAC" -> "vars";
"Bio::Root::Exception" -> "strict";
"Bio::Factory::FTLocationFactory" -> "vars";
"Bio::Roary::AnnotateGroups" -> "Class::MOP::Class";
"Bio::LocationI" -> "base";
"Data::OptList" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_218";
"Eval::Closure" -> "Eval::Closure::Sandbox_17";
"Class::MOP::Class" -> "UNIVERSAL";
"Moose::Meta::Class" -> "Class::MOP";
"Text::CSV_PP" -> "vars";
"Errno" -> "Config";
"Bio::SeqUtils" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_370";
"Eval::Closure" -> "Eval::Closure::Sandbox_350";
"strict" -> "strict";
"utf8" -> "warnings";
"Moose::Meta::Method::Delegation" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_91";
"Class::MOP::Method::Generated" -> "UNIVERSAL";
"File::Find" -> "strict";
"Bio::Roary::SplitGroups" -> "Bio::Roary::SplitGroups";
"Eval::Closure" -> "Eval::Closure::Sandbox_178";
"Sub::Install" -> "strict";
"re" -> "warnings";
"Bio::Roary::ContigsToGeneIDsFromGFF" -> "Bio::Roary::ParseGFFAnnotationRole";
"Eval::Closure" -> "Eval::Closure::Sandbox_332";
"Bio::LocationI" -> "strict";
"Class::MOP::Mixin::AttributeCore" -> "Moose::Meta::TypeConstraint::Registry";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::OrderGenes";
"Text::CSV::ErrorDiag" -> "strict";
"Moose::Meta::Method::Constructor" -> "Sub::Exporter";
"Moose::Meta::Role::Application::ToClass" -> "Scalar::Util";
"Bio::Root::IO" -> "strict";
"Graph::AdjacencyMatrix" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_347";
"Eval::Closure" -> "Eval::Closure::Sandbox_345";
"Graph::AdjacencyMap::Heavy" -> "base";
"Moose::Meta::TypeConstraint::Union" -> "strict";
"Bio::Roary::OrderGenes" -> "Storable";
"Moose::Meta::TypeConstraint::Enum" -> "Sub::Exporter";
"Text::CSV" -> "Text::CSV::ErrorDiag";
"Eval::Closure" -> "Eval::Closure::Sandbox_124";
"Eval::Closure" -> "Eval::Closure::Sandbox_87";
"Moose::Meta::Class" -> "Moose::Meta::Method::Destructor";
"Moose" -> "Package::DeprecationManager";
"Class::MOP::Method::Constructor" -> "parent";
"Class::MOP::Class" -> "List::Util";
"Package::DeprecationManager" -> "Params::Util";
"Bio::Roary::OrderGenes" -> "B::Deparse";
"Bio::Roary::Output::NumberOfGroups" -> "Class::MOP::Class";
"parent" -> "vars";
"POSIX" -> "Exporter";
"Moose::Meta::TypeConstraint::Class" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_392";
"Moose::Util::TypeConstraints" -> "Class::MOP";
"parent" -> "Class::MOP::Method::Inlined";
"FindBin" -> "File::Spec::Unix";
"Class::MOP::Method::Inlined" -> "Class::MOP::Method::Constructor";
"Moose::Util::MetaRole" -> "Package::DeprecationManager";
"Class::Load" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_273";
"Graph::Traversal::DFS" -> "Graph::Traversal";
"Bio::Roary::PostAnalysis" -> "Eval::Closure::Sandbox_388";
"Eval::Closure" -> "Eval::Closure::Sandbox_61";
"Eval::Closure" -> "Eval::Closure::Sandbox_214";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Class::MOP::Object";
"Eval::Closure" -> "Eval::Closure::Sandbox_21";
"Moose::Meta::TypeConstraint::Parameterizable" -> "Moose::Meta::TypeConstraint::Parameterized";
"Moose::Meta::TypeConstraint::Registry" -> "Scalar::Util";
"Clone" -> "strict";
"Moose::Meta::Role::Application::ToClass" -> "Class::MOP::Package";
"if" -> "UNIVERSAL";
"Moose" -> "Moose::Util";
"Moose::Meta::Role" -> "warnings";
"Moose::Meta::Method::Destructor" -> "warnings";
"Class::MOP::Attribute" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_123";
"Class::MOP::Object" -> "Module::Runtime";
"Bio::RangeI" -> "vars";
"Class::MOP" -> "Class::MOP::Mixin::HasAttributes";
"Moose::Meta::TypeConstraint::Parameterized" -> "Moose::Meta::TypeConstraint::Parameterizable";
"Class::MOP::Mixin::AttributeCore" -> "Class::MOP::Mixin::AttributeCore";
"Moose::Meta::Role" -> "Moose::Meta::Role::Attribute";
"Bio::Roary::GeneNamesFromGFF" -> "Bio::Tools::GFF";
"File::Path" -> "File::Spec::Unix";
"base" -> "Bio::AnnotationCollectionI";
"Class::MOP::Class:" -> "Class::MOP::Class";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::SplitGroups";
"Eval::Closure" -> "Eval::Closure::Sandbox_266";
"Class::MOP::Attribute" -> "Class::MOP::Mixin::AttributeCore";
"Bio::FeatureHolderI" -> "strict";
"Class::Data::Inheritable" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_408";
"Fcntl" -> "File::Temp";
"Data::OptList" -> "Sub::Install";
"Eval::Closure" -> "Eval::Closure::Sandbox_354";
"Bio::Roary::External::ProteinMuscleAlignmentFromNucleotides" -> "Moose";
"Moose::Meta::Attribute" -> "Class::MOP::Method";
"Moose::Meta::Role::Application::ToClass" -> "Moose::Meta::Role::Attribute";
"Moose" -> "warnings";
"Data::OptList" -> "overload";
"Class::MOP::Method::Meta" -> "Exporter";
"File::Copy" -> "Config";
"Eval::Closure" -> "Eval::Closure::Sandbox_316";
"Eval::Closure" -> "Eval::Closure::Sandbox_296";
"Graph" -> "Graph::Traversal";
"Moose::Meta::Role::Application::RoleSummation" -> "Sub::Exporter";
"Data::OptList" -> "Config";
"Bio::Root::IO" -> "base";
"IO::Handle" -> "strict";
"Moose::Meta::Class" -> "Moose::Meta::Class::Immutable::Trait";
"Class::MOP::Package" -> "Package::Stash::XS";
"AutoLoader" -> "strict";
"Moose::Meta::TypeConstraint::DuckType" -> "List::Util";
"Safe" -> "Safe";
"Bio::Seq" -> "base";
"Text::Glob" -> "vars";
"Class::MOP::Class:" -> "Class::MOP::Mixin::HasMethods";
"File::Copy" -> "File::Spec";
"Moose::Role" -> "Class::Load::XS";
"Eval::Closure" -> "Eval::Closure::Sandbox_322";
"Eval::Closure" -> "Eval::Closure::Sandbox_434";
"Class::MOP::Class::Immutable::Trait" -> "strict";
"Moose::Util::TypeConstraints" -> "Moose::Meta::TypeConstraint::Union";
"Bio::Location::WidestCoordPolicy" -> "Bio::Root::Root";
"Eval::Closure" -> "Eval::Closure::Sandbox_400";
"Class::MOP::Class" -> "Class::MOP";
"Class::MOP::Class" -> "Module::Runtime";
"Class::MOP::MiniTrait" -> "Class::MOP::Mixin::HasMethods";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::PostAnalysis";
"Bio::Seq::SeqFactory" -> "base";
"Bio::Location::CoordinatePolicyI" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_37";
"Eval::Closure" -> "Eval::Closure::Sandbox_176";
"Moose::Meta::TypeConstraint::Parameterizable" -> "Moose::Util::TypeConstraints";
"File::Temp" -> "Exporter";
"Moose::Meta::Method::Meta" -> "Class::MOP::Method::Meta";
"Class::MOP" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_186";
"Eval::Closure" -> "Eval::Closure::Sandbox_27";
"Module::Implementation" -> "Module::Implementation";
"Bio::Root::IO" -> "Exporter";
"Moose::Meta::Method::Overridden" -> "strict";
"Class::MOP::Deprecated" -> "Package::DeprecationManager";
"Moose::Meta::Object::Trait" -> "Exporter";
"Sub::Install" -> "UNIVERSAL";
"Sub::Exporter" -> "Moose::Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_228";
"Bio::Roary::InflateClusters" -> "Bio::Roary::Exceptions";
"Exception::Class::Base" -> "Exporter";
"Moose::Meta::Attribute" -> "Class::MOP::Package";
"Eval::Closure" -> "Eval::Closure::Sandbox_147";
"base" -> "Bio::Location::CoordinatePolicyI";
"Moose::Meta::Role" -> "UNIVERSAL";
"Moose::Util::TypeConstraints" -> "XSLoader";
"Eval::Closure" -> "Eval::Closure::Sandbox_24";
"Exception::Class::Base" -> "strict";
"Moose::Util::TypeConstraints" -> "Moose::Meta::TypeConstraint::DuckType";
"Eval::Closure" -> "Eval::Closure::Sandbox_195";
"Eval::Closure" -> "Eval::Closure::Sandbox_418";
"Bio::Tools::CodonTable" -> "strict";
"Moose::Meta::Method::Overridden" -> "Sub::Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_379";
"Sub::Exporter" -> "UNIVERSAL";
"Exception::Class::Base" -> "overload";
"Moose" -> "Sub::Exporter";
"Getopt::Long" -> "strict";
"Bio::Roary::PostAnalysis" -> "Class::MOP::Class";
"Moose::Meta::TypeConstraint" -> "Moose::Util::TypeConstraints";
"Moose::Role" -> "Module::Runtime";
"Eval::Closure" -> "Eval::Closure::Sandbox_200";
"Moose::Meta::Role" -> "Class::MOP::Package";
"Moose::Meta::Attribute" -> "Package::DeprecationManager";
"File::Basename" -> "File::Basename";
"Eval::Closure" -> "Eval::Closure::Sandbox_342";
"Moose::Meta::TypeConstraint::DuckType" -> "strict";
"Moose::Meta::Class" -> "Class::MOP::Package";
"Bio::Roary::Output::GroupsMultifastaNucleotide" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_150";
"Moose::Util::MetaRole" -> "Exporter";
"base" -> "Bio::Location::Atomic";
"Moose::Meta::Class::Immutable::Trait" -> "Exporter";
"Heap071::Fibonacci" -> "Graph::MSTHeapElem";
"Moose::Meta::Role::Application::ToClass" -> "parent";
"Moose::Meta::Mixin::AttributeCore" -> "warnings";
"IO::Handle" -> "Exporter";
"Bio::SeqIO" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_10";
"Sub::Exporter::Progressive" -> "List::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_432";
"Graph" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_64";
"Moose" -> "Moose::Exporter";
"Exporter" -> "Exporter::Heavy";
"Class::MOP::Method::Accessor" -> "Exporter";
"Class::MOP::Method::Inlined" -> "strict";
"Class::Data::Inheritable" -> "vars";
"Eval::Closure" -> "Eval::Closure::Sandbox_233";
"Bio::Roary::GeneNamesFromGFF" -> "Moose";
"Eval::Closure" -> "Eval::Closure::Sandbox_70";
"Eval::Closure" -> "Eval::Closure::Sandbox_348";
"base" -> "Bio::Location::SplitLocationI";
"Class::MOP::Method" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_159";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Eval::Closure::Sandbox_434";
"Moose::Util::TypeConstraints" -> "Exporter";
"Bio::Roary::Output::GroupsMultifastasNucleotide" -> "Moose";
"Eval::Closure" -> "Eval::Closure::Sandbox_51";
"Eval::Closure" -> "Eval::Closure::Sandbox_232";
"Graph::TransitiveClosure::Matrix" -> "Graph::AdjacencyMatrix";
"Data::OptList" -> "Params::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_160";
"Moose::Meta::TypeCoercion" -> "metaclass";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Meta::Role::Application::RoleSummation";
"Bio::Roary::ClustersRole" -> "Bio::Roary::ClustersRole";
"Bio::Roary::AnnotateGroups" -> "Moose";
"Moose::Meta::Role" -> "Moose::Meta::Role::Method";
"Moose::Meta::TypeCoercion" -> "Sub::Exporter";
"Getopt::Long" -> "Exporter";
"File::Temp" -> "IO::Seekable";
"Eval::Closure" -> "Eval::Closure::Sandbox_103";
"Class::MOP::Object" -> "Scalar::Util";
"Sub::Exporter::Progressive" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_85";
"Moose::Deprecated" -> "Package::DeprecationManager";
"Eval::Closure" -> "Eval::Closure::Sandbox_411";
"Moose::Meta::TypeConstraint::Role" -> "Exporter";
"Try::Tiny" -> "Class::MOP::Method::Accessor";
"Graph::Undirected" -> "Graph";
"Cwd" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_319";
"Eval::Closure" -> "Eval::Closure::Sandbox_245";
"Eval::Closure" -> "Eval::Closure::Sandbox_59";
"Bio::Root::IO" -> "warnings";
"Moose::Meta::Role::Application" -> "strict";
"Moose::Meta::Role::Composite" -> "warnings";
"Class::MOP::Mixin::HasMethods" -> "Sub::Name";
"Graph" -> "Graph::AdjacencyMap::Light";
"Graph::MSTHeapElem" -> "Exporter";
"Moose::Meta::Method::Destructor" -> "strict";
"Moose::Util::TypeConstraints::Builtins" -> "UNIVERSAL";
"Bio::Roary::Output::GroupsMultifastaNucleotide" -> "Moose";
"Eval::Closure" -> "Eval::Closure::Sandbox_163";
"Bio::SeqIO" -> "strict";
"Moose::Meta::Role::Application::RoleSummation" -> "Scalar::Util";
"Bio::Root::RootI" -> "strict";
"Getopt::Long" -> "constant";
"Moose::Meta::TypeConstraint::Role" -> "Moose::Meta::TypeConstraint::Role";
"parent" -> "Moose::Meta::Mixin::AttributeCore";
"Moose::Meta::Role::Method::Required" -> "warnings";
"Array::Utils" -> "strict";
"Tie::Hash" -> "Exporter";
"Class::MOP::Method::Inlined" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_12";
"Graph::BitMatrix" -> "strict";
"Cwd" -> "strict";
"Moose::Meta::Role::Application::ToRole" -> "Class::MOP::Class";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::AnnotateGroups";
"Moose::Role" -> "Class::MOP::Mixin::HasMethods";
"Bio::Roary::OrderGenes" -> "Graph";
"Exception::Class::Base" -> "warnings";
"Bio::Root::Root" -> "base";
"Moose::Util::TypeConstraints" -> "Class::MOP::Mixin::HasAttributes";
"Moose::Meta::Attribute" -> "Moose::Meta::Attribute";
"B" -> "XSLoader";
"Eval::Closure" -> "Eval::Closure::Sandbox_107";
"File::Temp" -> "constant";
"Moose::Meta::Class" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_226";
"Moose::Meta::TypeConstraint::Registry" -> "Class::MOP::Object";
"Eval::Closure" -> "Eval::Closure::Sandbox_374";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Meta::Role::Application::ToInstance";
"Moose::Meta::TypeConstraint::Union" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_240";
"Moose::Meta::TypeConstraint::Class" -> "warnings";
"Class::MOP::MiniTrait" -> "Module::Runtime";
"Data::Dumper" -> "Exporter";
"Moose::Meta::Role::Application" -> "Sub::Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_333";
"Class::MOP::Mixin::HasMethods" -> "Class::MOP::Class::Immutable::Class::MOP::Class";
"Bio::Roary::ContigsToGeneIDsFromGFF" -> "Class::MOP::Class";
"Bio::Roary::AnalyseGroups" -> "Bio::Roary::AnalyseGroups";
"Data::Dumper" -> "constant";
"Graph::Matrix" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_93";
"Bio::Roary::Output::GroupsMultifastasNucleotide" -> "Bio::Roary::Output::GroupsMultifastaNucleotide";
"Eval::Closure" -> "Eval::Closure::Sandbox_89";
"Moose::Meta::Method::Destructor" -> "Scalar::Util";
"Moose::Meta::TypeConstraint::Role" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_77";
"Heap071::Fibonacci" -> "vars";
"Module::Runtime" -> "XSLoader";
"Class::MOP::Mixin" -> "Class::MOP::Class";
"Moose::Meta::Role::Application::ToRole" -> "warnings";
"Moose::Exporter" -> "Class::MOP::Class";
"Moose::Util::TypeConstraints" -> "Sub::Exporter";
"Class::MOP::Method::Accessor" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_310";
"Moose::Meta::Method::Overridden" -> "parent";
"Class::MOP::Method::Meta" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_413";
"Class::MOP::Mixin::HasMethods" -> "strict";
"File::Path" -> "File::Basename";
"Safe" -> "utf8";
"Graph::AdjacencyMap::Light" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_113";
"overload" -> "overloading";
"Moose::Util" -> "strict";
"Moose::Meta::Role::Application::ToInstance" -> "Exporter";
"Bio::Root::RootI" -> "vars";
"Moose::Meta::Class" -> "Moose::Meta::Method::Overridden";
"Bio::Roary::CommandLine::Common" -> "Exporter";
"Bio::SeqFeature::Generic" -> "strict";
"File::Temp::Dir" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_111";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::OrderGenes";
"Moose::Exporter" -> "warnings";
"Moose::Meta::TypeConstraint::Registry" -> "warnings";
"Sub::Exporter" -> "Data::OptList";
"Bio::Factory::FTLocationFactory" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_215";
"Bio::Roary::ContigsToGeneIDsFromGFF" -> "UNIVERSAL";
"Class::MOP" -> "Class::MOP::Mixin::HasMethods";
"Class::MOP::Method::Constructor" -> "warnings";
"main" -> "Bio::Roary::CommandLine::RoaryPostAnalysis";
"Moose::Meta::Role::Application::RoleSummation" -> "metaclass";
"Class::MOP::Mixin::HasMethods" -> "Class::MOP::Method::Meta";
"Class::MOP::Object" -> "warnings";
"Number::Compare" -> "Exporter";
"File::Find" -> "warnings::register";
"Try::Tiny" -> "DynaLoader";
"Moose::Meta::TypeConstraint::Enum" -> "metaclass";
"B::Deparse" -> "warnings";
"Class::MOP::Module" -> "warnings";
"main" -> "File::Temp";
"Eval::Closure" -> "Eval::Closure::Sandbox_35";
"Eval::Closure" -> "Eval::Closure::Sandbox_366";
"Eval::Closure" -> "Eval::Closure::Sandbox_313";
"List::Util" -> "Data::OptList";
"Eval::Closure" -> "Eval::Closure::Sandbox_42";
"Moose::Meta::TypeConstraint::DuckType" -> "Scalar::Util";
"Graph::TransitiveClosure" -> "base";
"Moose::Meta::Role::Method::Conflicting" -> "strict";
"Moose::Meta::Instance" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_336";
"Class::MOP::Class" -> "Moose::Meta::Attribute";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Moose::Meta::Role::Composite";
"Bio::Tools::GFF" -> "strict";
"Bio::Annotation::SimpleValue" -> "strict";
"Moose::Meta::Role::Application::ToClass" -> "Class::MOP::Method";
"Moose::Meta::Attribute" -> "List::Util";
"Moose" -> "Moose::Deprecated";
"Eval::Closure" -> "Eval::Closure::Sandbox_405";
"Eval::Closure" -> "Eval::Closure::Sandbox_307";
"Bio::Annotation::TypeManager" -> "strict";
"Sub::Install" -> "warnings";
"parent" -> "strict";
"Moose::Meta::TypeCoercion" -> "Class::MOP::Mixin::HasAttributes";
"Class::MOP::Method::Wrapped" -> "Class::MOP::Method";
"Moose::Exporter" -> "Exporter";
"Class::Load" -> "UNIVERSAL";
"Bio::Factory::ObjectFactoryI" -> "strict";
"POSIX" -> "POSIX";
"Moose::Meta::Role::Attribute" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_141";
"Bio::Factory::SequenceStreamI" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_391";
"Graph::UnionFind" -> "strict";
"Moose::Meta::Class" -> "Moose::Meta::Mixin::AttributeCore";
"Eval::Closure" -> "Eval::Closure::Sandbox_340";
"Error" -> "strict";
"Class::MOP::Class" -> "parent";
"base" -> "vars";
"Class::MOP::Method::Generated" -> "parent";
"metaclass" -> "Module::Runtime";
"Class::Load::XS" -> "Exporter";
"Moose::Meta::TypeConstraint::Registry" -> "parent";
"Moose::Meta::Method::Accessor" -> "Class::MOP::Method::Generated";
"Eval::Closure" -> "Eval::Closure::Sandbox_202";
"Moose" -> "Class::MOP::MiniTrait";
"Bio::Roary::JobRunner::Role" -> "Moose::Role";
"Eval::Closure" -> "Eval::Closure::Sandbox_6";
"Eval::Closure" -> "Eval::Closure::Sandbox_72";
"Eval::Closure" -> "Eval::Closure::Sandbox_40";
"Class::MOP::Mixin::HasMethods" -> "Class::MOP";
"Eval::Closure" -> "Eval::Closure::Sandbox_424";
"Eval::Closure" -> "Eval::Closure::Sandbox_309";
"Bio::Roary::OrderGenes" -> "Eval::Closure::Sandbox_306";
"Class::MOP::Mixin::HasAttributes" -> "Class::MOP::Mixin::AttributeCore";
"MRO::Compat" -> "mro";
"Exception::Class" -> "Exception::Class::Base";
"constant" -> "constant";
"Eval::Closure" -> "Eval::Closure::Sandbox_55";
"Graph::SPTHeapElem" -> "base";
"Moose::Meta::Class::Immutable::Trait" -> "strict";
"Bio::Root::Root" -> "AutoLoader";
"Eval::Closure" -> "Eval::Closure::Sandbox_171";
"Moose::Meta::TypeConstraint::Registry" -> "Class::MOP::Class";
"Class::MOP::Mixin::HasMethods" -> "parent";
"Moose::Meta::TypeConstraint::Parameterized" -> "Scalar::Util";
"Class::MOP::Mixin::HasMethods" -> "Class::MOP::Mixin::HasMethods";
"Bio::Root::IO" -> "Exporter::Heavy";
"Eval::Closure" -> "Eval::Closure::Sandbox_67";
"Eval::Closure" -> "Eval::Closure::Sandbox_210";
"Eval::Closure" -> "Eval::Closure::Sandbox_25";
"Moose::Meta::Attribute" -> "Moose::Meta::Method::Delegation";
"Eval::Closure" -> "Eval::Closure::Sandbox_36";
"base" -> "Bio::Location::WidestCoordPolicy";
"File::Find::Rule" -> "Config";
"Eval::Closure" -> "Eval::Closure::Sandbox_179";
"Bio::RangeI" -> "integer";
"Moose::Meta::Role::Application" -> "Moose::Meta::Role::Application";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Getopt::Long::CallBack";
"Bio::Roary::GroupLabels" -> "Class::MOP::Class";
"Bio::Roary::Output::NumberOfGroups" -> "Exporter";
"Moose::Util::TypeConstraints" -> "warnings";
"Moose::Role" -> "Moose::Meta::Role";
"Moose::Util::TypeConstraints" -> "Moose::Meta::TypeConstraint::Registry";
"Eval::Closure" -> "Eval::Closure::Sandbox_209";
"Moose::Meta::Instance" -> "Scalar::Util";
"B" -> "strict";
"Bio::Roary::Output::EmblGroups" -> "POSIX";
"Eval::Closure" -> "Eval::Closure::Sandbox_281";
"Moose" -> "Class::MOP::Mixin::HasMethods";
"Bio::Factory::LocationFactoryI" -> "Exporter";
"metaclass" -> "UNIVERSAL";
"Bio::Root::IO" -> "File::Spec::Unix";
"Bio::Location::Atomic" -> "Bio::Location::WidestCoordPolicy";
"Moose::Util" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_136";
"Moose::Util::TypeConstraints::Builtins" -> "Moose::Meta::TypeConstraint::Registry";
"Eval::Closure" -> "warnings";
"Bio::Root::RootI" -> "Exporter";
"Moose::Meta::TypeCoercion" -> "Class::MOP::MiniTrait";
"Bio::Roary::Output::NumberOfGroups" -> "Bio::Roary::GroupStatistics";
"Class::MOP::Class" -> "Sub::Name";
"Moose::Meta::Method" -> "Class::MOP::Class";
"Bio::Roary::PostAnalysis" -> "Scalar::Util";
"Bio::Roary::OrderGenes" -> "Bio::Roary::ContigsToGeneIDsFromGFF";
"Bio::Roary::AnalyseGroups" -> "Scalar::Util";
"Class::MOP::Mixin::AttributeCore" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_399";
"Package::DeprecationManager" -> "warnings";
"Bio::Roary::SplitGroups" -> "Bio::Roary::AnalyseGroups";
"List::Util" -> "Class::MOP::Class";
"Class::MOP::Object" -> "parent";
"Moose::Meta::Role::Application::ToInstance" -> "warnings";
"Bio::SeqUtils" -> "Exporter";
"Moose::Meta::Class" -> "Sub::Exporter";
"File::Find::Rule" -> "Number::Compare";
"Graph" -> "Graph::TransitiveClosure";
"Bio::PrimarySeqI" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_269";
"Moose::Exporter" -> "Sub::Exporter";
"Moose::Meta::Role::Application" -> "List::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_80";
"Eval::Closure" -> "Eval::Closure::Sandbox_131";
"Moose::Util" -> "Exporter";
"Class::MOP::Attribute" -> "parent";
"DynaLoader" -> "Moose";
"Eval::Closure" -> "Eval::Closure::Sandbox_402";
"Graph::AdjacencyMap::Light" -> "Graph";
"Eval::Closure" -> "Eval::Closure::Sandbox_154";
"Eval::Closure" -> "Eval::Closure::Sandbox_409";
"File::Find::Rule" -> "strict";
"Moose::Meta::Role::Method::Required" -> "strict";
"Bio::Location::Simple" -> "base";
"Moose::Exporter" -> "Moose::Exporter";
"Moose::Role" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_387";
"Moose::Meta::TypeConstraint::Union" -> "Exporter";
"Moose::Meta::Attribute" -> "Moose::Util::TypeConstraints";
"File::Path" -> "Exporter";
"Eval::Closure" -> "Eval::Closure::Sandbox_430";
"Eval::Closure" -> "Eval::Closure::Sandbox_249";
"Graph::AdjacencyMap::Heavy" -> "strict";
"Moose::Meta::Role::Attribute" -> "List::Util";
"Moose::Meta::Method::Accessor" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_395";
"Moose::Meta::TypeConstraint::Union" -> "metaclass";
"Moose::Meta::Method::Destructor" -> "Class::MOP::Class";
"Class::MOP::Class" -> "Class::MOP::Module";
"Moose::Meta::Role::Method::Conflicting" -> "Sub::Exporter";
"Moose::Util::TypeConstraints" -> "Package::DeprecationManager";
"Moose::Util::MetaRole" -> "Moose::Util";
"IO" -> "warnings";
"Graph::AdjacencyMatrix" -> "Exporter";
"Clone" -> "Exporter";
"Bio::Roary::AnnotateGroups" -> "Data::Dumper";
"Class::MOP::Method::Meta" -> "constant";
"Moose::Role" -> "Class::MOP";
"Data::Dumper" -> "XSLoader";
"Class::MOP::Module" -> "parent";
"Class::MOP::Mixin::HasAttributes" -> "parent";
"Class::MOP::Method::Generated" -> "Class::MOP::Method::Generated";
"Eval::Closure" -> "Eval::Closure::Sandbox_112";
"Graph::Traversal" -> "UNIVERSAL";
"Moose::Meta::Role" -> "Class::MOP::Mixin::HasMethods";
"metaclass" -> "Moose::Meta::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_380";
"parent" -> "Class::MOP::Mixin::HasAttributes";
"Bio::Roary::OrderGenes" -> "Graph::Traversal";
"Eval::Closure" -> "Eval::Closure::Sandbox_3";
"Eval::Closure" -> "Eval::Closure::Sandbox_22";
"List::MoreUtils" -> "vars";
"Moose::Meta::Method::Destructor" -> "Class::MOP::Package";
"base" -> "Bio::Root::RootI";
"Eval::Closure" -> "Eval::Closure::Sandbox_427";
"Moose::Meta::Role" -> "Class::MOP::Mixin::HasAttributes";
"Class::MOP::Method" -> "Scalar::Util";
"Bio::Factory::FTLocationFactory" -> "base";
"Moose::Meta::TypeConstraint::Registry" -> "strict";
"Class::MOP::Mixin::HasOverloads" -> "Devel::OverloadInfo";
"Eval::Closure" -> "Eval::Closure::Sandbox_306";
"Class::Load" -> "Module::Runtime";
"Class::MOP::Attribute" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_386";
"Eval::Closure" -> "Eval::Closure::Sandbox_149";
"Class::MOP::Method::Constructor" -> "Scalar::Util";
"Moose::Meta::TypeConstraint::Parameterizable" -> "Scalar::Util";
"Moose::Meta::Class" -> "UNIVERSAL";
"Graph" -> "Safe";
"Eval::Closure" -> "Eval::Closure::Sandbox_213";
"Bio::Roary::SplitGroups" -> "Exporter";
"Class::MOP::Class" -> "Class::MOP::Method";
"base" -> "UNIVERSAL";
"Moose::Meta::Role::Application::RoleSummation" -> "warnings";
"Moose::Meta::TypeCoercion" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_229";
"Moose" -> "Class::MOP::Class";
"List::Util" -> "Sub::Exporter::Progressive";
"Eval::Closure" -> "Eval::Closure::Sandbox_378";
"Class::MOP::Overload" -> "strict";
"Moose::Meta::Role" -> "metaclass";
"Bio::Factory::SequenceFactoryI" -> "strict";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::External::ProteinMuscleAlignmentFromNucleotides";
"Eval::Closure" -> "Eval::Closure::Sandbox_334";
"Moose::Meta::Method::Accessor" -> "Moose::Meta::Method::Accessor";
"Class::MOP::Attribute" -> "Try::Tiny";
"Bio::Roary::InflateClusters" -> "Scalar::Util";
"Moose::Meta::Method::Accessor" -> "Moose::Meta::Attribute";
"Class::MOP::Mixin::HasAttributes" -> "Moose::Meta::Role::Attribute";
"IO::Seekable" -> "Exporter";
"Moose::Meta::Class" -> "Moose::Meta::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_75";
"Bio::FeatureHolderI" -> "base";
"Moose" -> "Scalar::Util";
"base" -> "Bio::Factory::ObjectBuilderI";
"Eval::Closure" -> "Eval::Closure::Sandbox_71";
"Eval::Closure" -> "Eval::Closure::Sandbox_390";
"Carp" -> "utf8";
"AutoLoader" -> "AutoLoader";
"Moose::Meta::TypeCoercion" -> "Class::MOP";
"Eval::Closure" -> "Eval::Closure::Sandbox_138";
"Eval::Closure" -> "Eval::Closure::Sandbox_335";
"Graph" -> "Graph::Undirected";
"Eval::Closure" -> "Eval::Closure::Sandbox_90";
"Eval::Closure" -> "Eval::Closure::Sandbox_34";
"Eval::Closure" -> "Eval::Closure::Sandbox_117";
"Eval::Closure" -> "Eval::Closure::Sandbox_301";
"File::Find::Rule" -> "Exporter";
"Moose::Meta::TypeCoercion::Union" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_351";
"Eval::Closure" -> "Eval::Closure::Sandbox_257";
"Eval::Closure" -> "Eval::Closure::Sandbox_321";
"Eval::Closure" -> "Eval::Closure::Sandbox_320";
"List::MoreUtils" -> "DynaLoader";
"Bio::Location::SplitLocationI" -> "base";
"Moose::Meta::Role::Application::ToClass" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_11";
"Carp" -> "warnings";
"Moose::Meta::Role::Composite" -> "Sub::Exporter";
"Graph" -> "Graph::UnionFind";
"Class::MOP::Deprecated" -> "warnings";
"Bio::Roary::GroupStatistics" -> "Moose";
"Moose::Exporter" -> "Class::MOP::Mixin::HasMethods";
"Eval::Closure" -> "Eval::Closure::Sandbox_121";
"Graph::Traversal" -> "Graph::Traversal";
"Moose" -> "Moose::Meta::TypeCoercion";
"Eval::Closure" -> "Eval::Closure::Sandbox_192";
"Moose::Exporter" -> "Class::MOP::Attribute";
"Bio::Root::Root" -> "Error";
"Class::MOP::Instance" -> "Class::MOP::Instance";
"Graph" -> "Graph::SPTHeapElem";
"Moose::Meta::Method::Delegation" -> "warnings";
"Moose::Meta::TypeConstraint" -> "Moose::Meta::TypeConstraint::Parameterizable";
"Moose::Meta::TypeCoercion::Union" -> "parent";
"File::Temp" -> "overload";
"Eval::Closure" -> "Eval::Closure::Sandbox_404";
"Bio::Roary::ClustersRole" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_23";
"Moose::Meta::TypeConstraint::Parameterized" -> "Class::MOP";
"Moose::Meta::Role::Application::RoleSummation" -> "UNIVERSAL";
"Getopt::Long::CallBack" -> "overload";
"Try::Tiny" -> "warnings";
"Moose::Util::TypeConstraints::Builtins" -> "Exporter";
"Moose::Meta::Role::Application::ToRole" -> "Sub::Exporter";
"Bio::SeqFeature::Generic" -> "base";
"Class::MOP::Mixin" -> "Scalar::Util";
"Class::MOP::Instance" -> "Class::MOP::Attribute";
"Graph::Traversal" -> "Graph::Traversal::DFS";
"Bio::Roary::AnnotateGroups" -> "Bio::Roary::GeneNamesFromGFF";
"Sub::Exporter::Progressive" -> "Sub::Exporter::Progressive";
"Bio::Roary::AnnotateGroups" -> "Array::Utils";
"Bio::RangeI" -> "Exporter";
"Bio::SeqUtils" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_98";
"Graph::AdjacencyMap::Light" -> "Graph::AdjacencyMap::Vertex";
"Eval::Closure" -> "Eval::Closure::Sandbox_329";
"Moose::Meta::TypeConstraint" -> "overload";
"Bio::Roary::AnnotateGroups" -> "File::Grep";
"Eval::Closure" -> "Eval::Closure::Sandbox_172";
"Class::MOP::Mixin::HasAttributes" -> "Exporter";
"Bio::DescribableI" -> "base";
"Graph::TransitiveClosure" -> "Graph::TransitiveClosure::Matrix";
"Eval::Closure" -> "Eval::Closure::Sandbox_421";
"Eval::Closure" -> "Eval::Closure::Sandbox_396";
"Class::MOP::Class" -> "Class::MOP::Method::Inlined";
"Moose::Meta::Role::Application::RoleSummation" -> "List::Util";
"Class::MOP::Mixin::HasMethods" -> "mro";
"Eval::Closure" -> "Eval::Closure::Sandbox_137";
"Moose::Meta::TypeConstraint::DuckType" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_220";
"Bio::Roary::AnnotateGroups" -> "Scalar::Util";
"Class::MOP" -> "UNIVERSAL";
"Moose::Meta::Method::Accessor" -> "strict";
"Class::MOP::Method::Inlined" -> "Exporter";
"Module::Runtime" -> "Class::Load::XS";
"mro" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_221";
"Eval::Closure" -> "Eval::Closure::Sandbox_318";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Eval::Closure::Sandbox_432";
"FindBin" -> "FindBin";
"Class::MOP::Class" -> "Exporter";
"Config" -> "warnings";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Bio::Roary::SplitGroups";
"Error::Simple" -> "vars";
"Moose" -> "XSLoader";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::AnalyseGroups";
"Graph" -> "strict";
"Moose::Meta::TypeCoercion" -> "Class::MOP::Class";
"Bio::Seq" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_38";
"Class::MOP::Instance" -> "Exporter";
"Moose::Meta::Instance" -> "warnings";
"Text::CSV_PP" -> "bytes";
"Class::MOP::Method::Accessor" -> "Class::MOP::Mixin::AttributeCore";
"Eval::Closure" -> "Eval::Closure::Sandbox_247";
"Graph::Traversal" -> "strict";
"base" -> "Bio::Factory::ObjectFactoryI";
"Errno" -> "strict";
"Module::Implementation" -> "UNIVERSAL";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::Output::EmblGroups";
"Bio::SeqAnalysisParserI" -> "Exporter";
"Storable" -> "vars";
"Moose::Meta::Method::Constructor" -> "parent";
"Sub::Name" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_246";
"Bio::SeqFeatureI" -> "base";
"Bio::Roary::Output::NumberOfGroups" -> "Moose";
"Devel::StackTrace" -> "Devel::StackTrace::Frame";
"Class::MOP" -> "Class::MOP::Attribute";
"Moose::Meta::Class" -> "Moose::Meta::Method::Meta";
"Moose::Meta::Method::Constructor" -> "Class::MOP::Method::Constructor";
"Class::MOP::Method::Inlined" -> "Class::MOP::Method::Inlined";
"Class::MOP::Method" -> "Class::MOP::Class";
"Bio::PrimarySeqI" -> "Bio::Tools::CodonTable";
"Devel::GlobalDestruction" -> "warnings";
"Bio::Root::IO" -> "File::Temp::Dir";
"Eval::Closure" -> "Eval::Closure::Sandbox_100";
"base" -> "Bio::DB::RandomAccessI";
"Class::MOP::Method::Generated" -> "Class::MOP::Method::Constructor";
"File::Path" -> "strict";
"Moose::Util::TypeConstraints" -> "re";
"Module::Runtime" -> "Package::Stash::XS";
"Bio::Root::Root" -> "Bio::Root::Exception";
"Module::Implementation" -> "strict";
"Moose::Meta::Role::Application::ToClass" -> "Sub::Exporter";
"Bio::SeqI" -> "base";
"DynaLoader" -> "Cwd";
"Class::MOP::Class" -> "Moose::Meta::Method::Constructor";
"Text::CSV::ErrorDiag" -> "overload";
"Moose::Meta::TypeConstraint" -> "Moose::Meta::TypeConstraint::Role";
"Class::MOP::Instance" -> "Moose::Meta::Instance";
"Moose::Util::TypeConstraints" -> "Scalar::Util";
"Class::MOP::Method::Accessor" -> "Moose::Meta::Method::Accessor";
"Eval::Closure" -> "Eval::Closure::Sandbox_69";
"Eval::Closure" -> "Eval::Closure::Sandbox_126";
"Bio::Location::Fuzzy" -> "strict";
"Moose" -> "Class::MOP::Package";
"Getopt::Long" -> "UNIVERSAL";
"Class::MOP::Class" -> "Class::MOP::Mixin::AttributeCore";
"Moose::Meta::TypeCoercion::Union" -> "metaclass";
"Eval::Closure" -> "Eval::Closure::Sandbox_277";
"Moose::Meta::Method" -> "strict";
"Moose::Meta::Role::Application::ToRole" -> "strict";
"Moose::Meta::Role::Application::ToInstance" -> "strict";
"Class::MOP::Method::Inlined" -> "Class::MOP::Class";
"Bio::Range" -> "Exporter";
"Moose::Meta::Mixin::AttributeCore" -> "parent";
"Moose::Meta::Method::Meta" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_298";
"Eval::Closure" -> "Eval::Closure::Sandbox_106";
"Bio::Factory::ObjectBuilderI" -> "strict";
"Moose::Meta::TypeConstraint" -> "Moose::Meta::TypeConstraint::Parameterized";
"Moose" -> "Class::MOP";
"Class::MOP::Overload" -> "parent";
"Class::MOP::Class" -> "Class::MOP::Attribute";
"Moose::Meta::Attribute" -> "Moose::Meta::TypeConstraint::Registry";
"Class::MOP::Method::Constructor" -> "UNIVERSAL";
"Eval::Closure" -> "Eval::Closure::Sandbox_56";
"Bio::AnnotationI" -> "strict";
"Class::MOP::Method::Meta" -> "Class::MOP::Object";
"Eval::Closure" -> "Eval::Closure::Sandbox_353";
"Bio::Factory::SequenceFactoryI" -> "base";
"Error" -> "vars";
"utf8" -> "utf8";
"base" -> "Bio::SeqFeatureI";
"Moose::Meta::Attribute" -> "Class::MOP";
"Package::DeprecationManager" -> "Package::DeprecationManager";
"Moose::Meta::TypeConstraint" -> "Eval::Closure";
"Moose::Meta::Class::Immutable::Trait" -> "parent";
"metaclass" -> "strict";
"DynaLoader" -> "DynaLoader";
"Class::MOP::Method::Wrapped" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_262";
"Moose::Meta::Method::Overridden" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_423";
"constant" -> "utf8";
"Graph::AdjacencyMap::Vertex" -> "Exporter";
"Moose::Meta::Method::Destructor" -> "Class::MOP::Method::Generated";
"Eval::Closure" -> "Eval::Closure::Sandbox_8";
"Class::MOP::Mixin::HasOverloads" -> "Class::MOP::Overload";
"Graph" -> "Graph::Attribute";
"Moose::Util::MetaRole" -> "warnings";
"List::Util" -> "Class::MOP::Mixin::HasMethods";
"Eval::Closure" -> "Eval::Closure::Sandbox_414";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::Output::NumberOfGroups";
"Bio::IdentifiableI" -> "strict";
"Bio::Root::Root" -> "Clone";
"Bio::Roary::PostAnalysis" -> "Bio::Roary::Output::GroupsMultifastasNucleotide";
"Class::MOP::Mixin::HasAttributes" -> "Moose::Meta::Role";
"Moose::Meta::Role::Composite" -> "metaclass";
"Bio::Tools::CodonTable" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_346";
"Bio::Roary::GeneNamesFromGFF" -> "UNIVERSAL";
"Moose::Exporter" -> "DynaLoader";
"Graph::AdjacencyMap" -> "Graph::AdjacencyMap::Heavy";
"Moose::Meta::TypeConstraint::Role" -> "Scalar::Util";
"Bio::Factory::ObjectBuilderI" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_377";
"Eval::Closure" -> "Eval::Closure::Sandbox_394";
"Devel::OverloadInfo" -> "Exporter";
"File::Path" -> "vars";
"Try::Tiny" -> "Moose::Meta::Method::Accessor";
"Fcntl" -> "strict";
"Bio::Location::WidestCoordPolicy" -> "strict";
"Moose::Meta::Method::Destructor" -> "Try::Tiny";
"Moose" -> "Moose::Meta::Role::Composite";
"Moose::Meta::TypeConstraint::DuckType" -> "metaclass";
"Moose::Util" -> "Scalar::Util";
"Moose::Meta::TypeConstraint::Parameterizable" -> "parent";
"Eval::Closure" -> "Eval::Closure::Sandbox_185";
"Class::MOP::Mixin::HasAttributes" -> "Class::MOP::Mixin::HasAttributes";
"Eval::Closure" -> "Eval::Closure::Sandbox_78";
"Exporter::Heavy" -> "Exporter::Heavy";
"Class::MOP::Package" -> "Class::MOP::Package";
"Eval::Closure" -> "Eval::Closure::Sandbox_208";
"Moose::Meta::Class" -> "strict";
"Bio::Root::Root" -> "Error::subs";
"Bio::Location::Atomic" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_120";
"Eval::Closure" -> "Eval::Closure::Sandbox_239";
"Moose::Meta::TypeConstraint::DuckType" -> "warnings";
"Class::MOP::Class" -> "Class::MOP::Method::Accessor";
"Eval::Closure" -> "Eval::Closure::Sandbox_140";
"Bio::Roary::PostAnalysis" -> "Moose";
"Exception::Class::Base" -> "Devel::StackTrace";
"Data::Dumper" -> "Data::Dumper";
"Eval::Closure" -> "Eval::Closure::Sandbox_328";
"Graph::MSTHeapElem" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_248";
"Exporter" -> "Exporter";
"Moose::Meta::Attribute" -> "Class::MOP::Attribute";
"Moose::Meta::Class" -> "Moose::Meta::Method::Constructor";
"Class::MOP::Attribute" -> "Class::MOP::Class";
"Moose::Meta::Role::Application" -> "Class::MOP::Class";
"Moose::Meta::Role::Application::ToClass" -> "Moose::Meta::Role::Application";
"Graph::Traversal::DFS" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_305";
"Bio::Roary::Output::EmblGroups" -> "Class::MOP::Class";
"Bio::Roary::Output::GroupsMultifastasNucleotide" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_271";
"Eval::Closure" -> "Eval::Closure::Sandbox_211";
"Class::MOP::Method::Constructor" -> "Class::MOP::Method::Constructor";
"base" -> "Bio::DescribableI";
"Module::Runtime" -> "Module::Runtime";
"Moose::Meta::TypeConstraint" -> "Exporter";
"B::Deparse" -> "B";
"Eval::Closure" -> "Eval::Closure::Sandbox_97";
"Moose::Meta::Method::Accessor" -> "Class::MOP::Instance";
"Moose::Meta::TypeConstraint::Parameterized" -> "strict";
"Bio::Roary::CommandLine::Common" -> "FindBin";
"Moose::Deprecated" -> "Moose::Deprecated";
"Moose::Meta::Class" -> "Data::OptList";
"Class::MOP::Mixin::HasMethods" -> "Class::MOP::Package";
"File::Grep" -> "vars";
"Moose::Meta::Role::Application::RoleSummation" -> "Class::MOP::Class";
"Class::MOP::Instance" -> "Scalar::Util";
"Number::Compare" -> "vars";
"Class::MOP::Method::Generated" -> "Moose::Meta::Method::Accessor";
"Eval::Closure" -> "Eval::Closure::Sandbox_290";
"Moose::Meta::TypeConstraint" -> "Sub::Exporter";
"Class::Load" -> "Class::Load";
"Getopt::Long" -> "Getopt::Long";
"Bio::Factory::ObjectFactoryI" -> "Exporter";
"Moose::Meta::Class" -> "Moose::Meta::Method::Augmented";
"Moose::Meta::TypeConstraint::Role" -> "Moose::Meta::TypeConstraint";
"Eval::Closure" -> "Eval::Closure::Sandbox_244";
"Class::MOP::Method::Meta" -> "Class::MOP::Method::Meta";
"Moose::Meta::Role" -> "Class::MOP::Mixin";
"File::Temp" -> "Cwd";
"Moose::Exporter" -> "List::MoreUtils";
"Moose::Meta::Role::Application::ToInstance" -> "UNIVERSAL";
"Bio::Roary::Output::NumberOfGroups" -> "Bio::Roary::Output::NumberOfGroups";
"Moose::Util" -> "Module::Runtime";
"Moose::Meta::Role" -> "Moose::Meta::Role::Application::ToClass";
"Moose::Util::TypeConstraints" -> "Moose::Meta::TypeConstraint::Parameterized";
"Moose::Meta::Method::Augmented" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_383";
"overloading" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_173";
"Moose::Meta::TypeConstraint::Enum" -> "warnings";
"Class::MOP::Object" -> "Class::MOP::Class";
"File::Copy" -> "DynaLoader";
"FindBin" -> "Cwd";
"Eval::Closure" -> "Eval::Closure::Sandbox_188";
"Class::MOP::MiniTrait" -> "strict";
"Bio::Roary::CommandLine::RoaryPostAnalysis" -> "Exporter";
"Opcode" -> "Opcode";
"Moose::Object" -> "strict";
"Moose::Meta::Class" -> "Moose::Meta::Attribute";
"parent" -> "Class::MOP::Method::Generated";
"Eval::Closure" -> "Eval::Closure::Sandbox_57";
"Moose::Util::MetaRole" -> "strict";
"Bio::Root::IO" -> "Bio::Root::IO";
"Bio::Roary::Output::GroupsMultifastaNucleotide" -> "Bio::SeqIO";
"Bio::SeqFeatureI" -> "Exporter";
"Class::MOP::Method" -> "Class::MOP::Method::Wrapped";
"Moose::Meta::TypeConstraint" -> "Class::MOP::Class";
"Moose" -> "Moose::Meta::Instance";
"FindBin" -> "Exporter";
"Class::MOP::Mixin::HasAttributes" -> "Class::MOP::Attribute";
"Bio::Roary::AnalyseGroups" -> "Eval::Closure::Sandbox_171";
"Data::OptList" -> "List::Util";
"Graph::TransitiveClosure::Matrix" -> "strict";
"Bio::Range" -> "integer";
"Params::Util" -> "vars";
"Eval::Closure" -> "Eval::Closure::Sandbox_92";
"Bio::Roary::AnalyseGroups" -> "Class::MOP::Class";
"Eval::Closure" -> "Eval::Closure::Sandbox_167";
"Moose::Exporter" -> "strict";
"Bio::FeatureHolderI" -> "Exporter";
"File::Grep" -> "File::Grep";
"Eval::Closure" -> "Eval::Closure::Sandbox_54";
"Bio::Roary::GroupStatistics" -> "XSLoader";
"Bio::Roary::GroupStatistics" -> "Bio::Roary::GroupStatistics";
"Class::MOP::Class" -> "strict";
"Class::MOP::Instance" -> "parent";
"File::Find::Rule" -> "Text::Glob";
"Bio::Roary::AnalyseGroups" -> "UNIVERSAL";
"Bio::Tools::CodonTable" -> "Bio::SeqUtils";
"Moose" -> "Moose::Meta::TypeConstraint";
"base" -> "Bio::LocationI";
"Class::MOP::Method::Inlined" -> "Class::MOP::Method";
"Bio::Seq::SeqBuilder" -> "strict";
"Class::MOP::Overload" -> "warnings";
"File::Temp" -> "File::Spec::Unix";
"Eval::Closure" -> "Eval::Closure::Sandbox_349";
"base" -> "Bio::AnnotatableI";
"Bio::Tools::GuessSeqFormat" -> "base";
"Bio::DB::RandomAccessI" -> "strict";
"Bio::Annotation::Collection" -> "strict";
"Moose::Util::TypeConstraints" -> "strict";
"Class::MOP::Attribute" -> "Class::MOP::Attribute";
"Moose::Meta::Method::Constructor" -> "Moose::Meta::Method::Constructor";
"Eval::Closure" -> "Eval::Closure::Sandbox_81";
"Eval::Closure" -> "Eval::Closure::Sandbox_193";
"Moose::Meta::Class" -> "Class::MOP::Class";
"Graph::AdjacencyMatrix" -> "Graph::Matrix";
"Moose::Meta::TypeConstraint::Enum" -> "parent";
"Bio::Factory::ObjectFactoryI" -> "base";
"Eval::Closure" -> "Eval::Closure::Sandbox_236";
"Class::Load::XS" -> "warnings";
"Eval::Closure" -> "Eval::Closure::Sandbox_242";
"Eval::Closure" -> "Eval::Closure::Sandbox_101";
"Moose::Meta::Method::Augmented" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_326";
"Eval::Closure" -> "Eval::Closure::Sandbox_294";
"Text::CSV_PP" -> "strict";
"Moose::Meta::Attribute" -> "Class::MOP::Mixin::AttributeCore";
"Moose::Meta::TypeConstraint" -> "Moose::Util::TypeConstraints::Builtins";
"File::Temp::Dir" -> "File::Temp::Dir";
"List::MoreUtils" -> "strict";
"Eval::Closure" -> "Eval::Closure::Sandbox_155";
"Class::MOP::Mixin::HasAttributes" -> "Scalar::Util";
"Eval::Closure" -> "Eval::Closure::Sandbox_230";
"Eval::Closure" -> "Eval::Closure::Sandbox_407";
"Moose::Meta::TypeCoercion::Union" -> "Sub::Exporter";
}
