Class ChromosomeSimpleName

java.lang.Object
org.snpeff.interval.ChromosomeSimpleName
public class ChromosomeSimpleName extends Object
Convert chromosome names to simple names
Author:
pcingola

  • Field Details

    • CHROMO_PREFIX

      public static final String[] CHROMO_PREFIX

  • Method Details

    • get

      public static String get(String chrName)
      Get a simple name for the chromosome

    • simpleName

      protected String simpleName(String chr)
      Simplify chromosome name

    • simpleNameCache

      protected String simpleNameCache(String chrName)
      Query cache before simplifying name