Uses of Class
org.snpeff.reactome.Entity
Packages that use Entity
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Uses of Entity in org.snpeff.reactome
Subclasses of Entity in org.snpeff.reactomeClasses in org.snpeff.reactome that implement interfaces with type arguments of type EntityModifier and TypeClassDescriptionclassA reactome basic entity (e.g.classLoad reactome data from TXT filesMethods in org.snpeff.reactome that return types with arguments of type EntityMethods in org.snpeff.reactome with parameters of type EntityModifier and TypeMethodDescriptionvoidvoidAdd an entity invalid input: '<'-> geneIdintMethod parameters in org.snpeff.reactome with type arguments of type Entity -
Uses of Entity in org.snpeff.reactome.events
Subclasses of Entity in org.snpeff.reactome.eventsModifier and TypeClassDescriptionclassA black box eventclassA catalyst activity eventclassA Reactome complex (a bunch of molecules or complexesclassA depolymerization eventclassA reactome event (any generic event, from pathways to polymerizations)classA Reactome pathwayclassA polymerization eventclassA reactionClasses in org.snpeff.reactome.events that implement interfaces with type arguments of type EntityModifier and TypeClassDescriptionclassA Reactome complex (a bunch of molecules or complexesFields in org.snpeff.reactome.events with type parameters of type EntityModifier and TypeFieldDescriptionReaction.catalystReaction.inputsReaction.outputsprotected HashMap<Entity, Reaction.RegulationType> Reaction.regulatorMethods in org.snpeff.reactome.events that return types with arguments of type EntityModifier and TypeMethodDescriptionReaction.getCatalyst()Reaction.getInputs()Reaction.getOutputs()Reaction.getRegulator()Complex.iterator()Methods in org.snpeff.reactome.events with parameters of type EntityModifier and TypeMethodDescriptionvoidvoidReaction.addCatalyst(Entity e) voidvoidvoidReaction.addRegulator(Entity e, String type) voidReaction.addRegulator(Entity e, Reaction.RegulationType type) Method parameters in org.snpeff.reactome.events with type arguments of type Entity