BitMagic-C++: Globals

BitMagic-C++

### - a -

- add_centromer_Ns() : xsample06.cpp
- add_object() : xsample08.cpp

### - b -

- build_histogram() : xsample02.cpp
- build_vector_pairs() : xsample03.cpp
- bv2delta() : xsample01.cpp
- bv_count_and() : sample11.cpp
- bv_count_range() : sample11.cpp
- bv_count_range_acc() : sample11.cpp
- bv_count_test() : sample11.cpp
- bv_count_to_acc() : sample11.cpp
- bv_count_to_range_acc() : sample11.cpp
- bv_counted_enumerator() : sample11.cpp
- bv_set_bit_no_check_test() : sample12.cpp
- bv_set_bit_test() : sample12.cpp
- bvector_bulk_set_test() : sample12.cpp

### - c -

- calc_memory_footprint() : xsample01.cpp
- check_sparse() : xsample05.cpp
- combine_or_test() : sample12.cpp
- compare_sv() : xsample06.cpp
- compare_sv_it() : xsample06.cpp
- construct_bvector() : xsample01.cpp
- convert_bv2bvs() : xsample01.cpp
- convert_bv2sv() : xsample01.cpp
- convert_bv2vect() : xsample01.cpp
- counting_sort() : xsample02.cpp
- counting_sort_naive() : xsample02.cpp
- counting_sort_parallel() : xsample02.cpp
- counting_sort_subbatch() : xsample02.cpp

### - d -

- DemoAND() : bvsetalgebra.cpp
- DemoAND_SUB() : bvsetalgebra.cpp
- DemoINV() : bvsetalgebra.cpp
- DemoOR() : bvsetalgebra.cpp
- DemoSUB() : bvsetalgebra.cpp
- DemoXOR() : bvsetalgebra.cpp
- destroy_map() : xsample01.cpp
- DNA2int() : xsample06.cpp

### - f -

- fill_bvector() : sample3.cpp , sample4.cpp , sample15.cpp , sample14.cpp
- find_word_2way() : xsample04.cpp
- find_words() : xsample04.cpp
- fingerprint_compare() : xsample04a.cpp

### - g -

- gen() : sample11.cpp , xsample02.cpp , svsample06.cpp
- generate_big_case() : xsample06.cpp
- generate_bv_index() : xsample01.cpp
- generate_bvector() : sample11.cpp
- generate_DNA_vector() : xsample06.cpp
- generate_kmers() : xsample04.cpp
- generate_mismatches() : xsample06.cpp
- generate_random_subset() : xsample03.cpp
- generate_random_vector() : xsample01.cpp
- generate_set() : svsample07.cpp
- generate_string_set() : strsvsample02.cpp , strsvsample03.cpp
- generate_test_set() : svsample06.cpp
- generate_test_vectors() : sample12.cpp

### - h -

- hitlist_compare() : xsample04.cpp

### - i -

- insertion_sort() : strsvsample02.cpp , svsample07.cpp
- int2DNA() : xsample06.cpp

### - l -

- load_dict_report() : xsample05.cpp
- load_FASTA() : xsample04.cpp , xsample04a.cpp
- load_snp_report() : xsample03.cpp

### - m -

- main() : sample1.cpp , bvsample01_64.cpp , rscsample03.cpp , sample20.cpp , rscsample01.cpp , svsample09.cpp , svsample08.cpp , strsvsample04.cpp , svsample06.cpp , svsample05.cpp , svsample04.cpp , svsample03.cpp , svsample02.cpp , svsample01.cpp , strsvsample05.cpp , svsample07.cpp , strsvsample03.cpp , strsvsample02.cpp , strsvsample01.cpp , xsample08.cpp , xsample06.cpp , xsample05.cpp , xsample04a.cpp , xsample04.cpp , xsample03.cpp , xsample02.cpp , xsample01.cpp , bvsetalgebra.cpp , sample23.cpp , sample22.cpp , sample21.cpp , rscsample02.cpp , sample19.cpp , sample18.cpp , sample17.cpp , sample16.cpp , sample15.cpp , sample14.cpp , sample12.cpp , sample11.cpp , sample10.cpp , sample9.cpp , sample8.cpp , sample7.cpp , sample6.cpp , sample5.cpp , sample4.cpp , sample3.cpp , sample2.cpp
- make_BLOB() : bvsetalgebra.cpp

### - p -

- parse_args() : xsample03.cpp , xsample04.cpp , xsample05.cpp , xsample04a.cpp
- pick_benchmark_set() : xsample05.cpp
- pre_heat() : sample11.cpp
- Print() : sample5.cpp , sample7.cpp , sample8.cpp
- print_bvector() : sample2.cpp , bvsetalgebra.cpp , svsample05.cpp , svsample06.cpp
- print_model() : xsample08.cpp
- print_sorted() : xsample02.cpp
- print_statistics() : sample3.cpp , sample4.cpp
- print_svector() : svsample04.cpp , svsample05.cpp , rscsample01.cpp
- PrintContainer() : sample16.cpp , sample20.cpp , sample22.cpp , sample21.cpp , sample7.cpp , sample10.cpp , sample12.cpp , sample8.cpp
- PrintSV() : rscsample03.cpp , rscsample02.cpp , svsample08.cpp , xsample06.cpp

### - r -

- rand_dis() : sample11.cpp , xsample02.cpp , svsample06.cpp
- run_benchmark() : xsample03.cpp , xsample05.cpp

### - s -

- search_vector_pairs() : xsample03.cpp
- serialize_bvector() : sample4.cpp
- set_feature_strand() : xsample08.cpp
- show_help() : xsample03.cpp , xsample04.cpp , xsample04a.cpp , xsample05.cpp
- sort_map() : xsample02.cpp
- speed_test_bv_index() : xsample01.cpp
- speed_test_bvs_index() : xsample01.cpp
- speed_test_sv_index() : xsample01.cpp
- speed_test_vect_index() : xsample01.cpp
- splice_model() : xsample08.cpp

### - t -

- test_mismatch_search() : xsample06.cpp
- test_strcmp() : xsample06.cpp
- test_sv_cmp() : xsample06.cpp
- test_sv_cmp_it() : xsample06.cpp
- test_vect_mismatch_search() : xsample06.cpp
- TestSV() : xsample06.cpp

### - v -

- vector_search() : svsample06.cpp