# Authors: Gilles Louppe, Mathieu Blondel, Maheshakya Wijewardena
# License: BSD 3 clause

import numpy as np

from .base import SelectorMixin
from ..base import (TransformerMixin, BaseEstimator, clone,
                    MetaEstimatorMixin)
from ..externals import six

from ..utils import safe_mask, check_array, deprecated
from ..utils.validation import NotFittedError, check_is_fitted


def _get_feature_importances(estimator):
    """Retrieve or aggregate feature importances from estimator"""
    if hasattr(estimator, "feature_importances_"):
        importances = estimator.feature_importances_

    elif hasattr(estimator, "coef_"):
        if estimator.coef_.ndim == 1:
            importances = np.abs(estimator.coef_)

        else:
            importances = np.sum(np.abs(estimator.coef_), axis=0)

    else:
        raise ValueError(
            "The underlying estimator %s has no `coef_` or "
            "`feature_importances_` attribute. Either pass a fitted estimator"
            " to SelectFromModel or call fit before calling transform."
            % estimator.__class__.__name__)

    return importances


def _calculate_threshold(estimator, importances, threshold):
    """Interpret the threshold value"""

    if threshold is None:
        # determine default from estimator
        est_name = estimator.__class__.__name__
        if ((hasattr(estimator, "penalty") and estimator.penalty == "l1") or
                "Lasso" in est_name):
            # the natural default threshold is 0 when l1 penalty was used
            threshold = 1e-5
        else:
            threshold = "mean"

    if isinstance(threshold, six.string_types):
        if "*" in threshold:
            scale, reference = threshold.split("*")
            scale = float(scale.strip())
            reference = reference.strip()

            if reference == "median":
                reference = np.median(importances)
            elif reference == "mean":
                reference = np.mean(importances)
            else:
                raise ValueError("Unknown reference: " + reference)

            threshold = scale * reference

        elif threshold == "median":
            threshold = np.median(importances)

        elif threshold == "mean":
            threshold = np.mean(importances)

        else:
            raise ValueError("Expected threshold='mean' or threshold='median' "
                             "got %s" % threshold)

    else:
        threshold = float(threshold)

    return threshold


class _LearntSelectorMixin(TransformerMixin):
    # Note because of the extra threshold parameter in transform, this does
    # not naturally extend from SelectorMixin
    """Transformer mixin selecting features based on importance weights.

    This implementation can be mixin on any estimator that exposes a
    ``feature_importances_`` or ``coef_`` attribute to evaluate the relative
    importance of individual features for feature selection.
    """
    @deprecated('Support to use estimators as feature selectors will be '
                'removed in version 0.19. Use SelectFromModel instead.')
    def transform(self, X, threshold=None):
        """Reduce X to its most important features.

        Uses ``coef_`` or ``feature_importances_`` to determine the most
        important features.  For models with a ``coef_`` for each class, the
        absolute sum over the classes is used.

        Parameters
        ----------
        X : array or scipy sparse matrix of shape [n_samples, n_features]
            The input samples.

        threshold : string, float or None, optional (default=None)
            The threshold value to use for feature selection. Features whose
            importance is greater or equal are kept while the others are
            discarded. If "median" (resp. "mean"), then the threshold value is
            the median (resp. the mean) of the feature importances. A scaling
            factor (e.g., "1.25*mean") may also be used. If None and if
            available, the object attribute ``threshold`` is used. Otherwise,
            "mean" is used by default.

        Returns
        -------
        X_r : array of shape [n_samples, n_selected_features]
            The input samples with only the selected features.
        """
        check_is_fitted(self, ('coef_', 'feature_importances_'),
                        all_or_any=any)

        X = check_array(X, 'csc')
        importances = _get_feature_importances(self)
        if len(importances) != X.shape[1]:
            raise ValueError("X has different number of features than"
                             " during model fitting.")

        if threshold is None:
            threshold = getattr(self, 'threshold', None)
        threshold = _calculate_threshold(self, importances, threshold)

        # Selection
        try:
            mask = importances >= threshold
        except TypeError:
            # Fails in Python 3.x when threshold is str;
            # result is array of True
            raise ValueError("Invalid threshold: all features are discarded.")

        if np.any(mask):
            mask = safe_mask(X, mask)
            return X[:, mask]
        else:
            raise ValueError("Invalid threshold: all features are discarded.")


class SelectFromModel(BaseEstimator, SelectorMixin):
    """Meta-transformer for selecting features based on importance weights.

    .. versionadded:: 0.17

    Parameters
    ----------
    estimator : object
        The base estimator from which the transformer is built.
        This can be both a fitted (if ``prefit`` is set to True)
        or a non-fitted estimator.

    threshold : string, float, optional default None
        The threshold value to use for feature selection. Features whose
        importance is greater or equal are kept while the others are
        discarded. If "median" (resp. "mean"), then the ``threshold`` value is
        the median (resp. the mean) of the feature importances. A scaling
        factor (e.g., "1.25*mean") may also be used. If None and if the
        estimator has a parameter penalty set to l1, either explicitly
        or implicity (e.g, Lasso), the threshold is used is 1e-5.
        Otherwise, "mean" is used by default.

    prefit : bool, default False
        Whether a prefit model is expected to be passed into the constructor
        directly or not. If True, ``transform`` must be called directly
        and SelectFromModel cannot be used with ``cross_val_score``,
        ``GridSearchCV`` and similar utilities that clone the estimator.
        Otherwise train the model using ``fit`` and then ``transform`` to do
        feature selection.

    Attributes
    ----------
    `estimator_`: an estimator
        The base estimator from which the transformer is built.
        This is stored only when a non-fitted estimator is passed to the
        ``SelectFromModel``, i.e when prefit is False.

    `threshold_`: float
        The threshold value used for feature selection.
    """
    def __init__(self, estimator, threshold=None, prefit=False):
        self.estimator = estimator
        self.threshold = threshold
        self.prefit = prefit

    def _get_support_mask(self):
        # SelectFromModel can directly call on transform.
        if self.prefit:
            estimator = self.estimator
        elif hasattr(self, 'estimator_'):
            estimator = self.estimator_
        else:
            raise ValueError(
                'Either fit the model before transform or set "prefit=True"'
                ' while passing the fitted estimator to the constructor.')
        scores = _get_feature_importances(estimator)
        self.threshold_ = _calculate_threshold(estimator, scores,
                                               self.threshold)
        return scores >= self.threshold_

    def fit(self, X, y=None, **fit_params):
        """Fit the SelectFromModel meta-transformer.

        Parameters
        ----------
        X : array-like of shape (n_samples, n_features)
            The training input samples.

        y : array-like, shape (n_samples,)
            The target values (integers that correspond to classes in
            classification, real numbers in regression).

        **fit_params : Other estimator specific parameters

        Returns
        -------
        self : object
            Returns self.
        """
        if self.prefit:
            raise NotFittedError(
                "Since 'prefit=True', call transform directly")
        if not hasattr(self, "estimator_"):
            self.estimator_ = clone(self.estimator)
        self.estimator_.fit(X, y, **fit_params)
        return self

    def partial_fit(self, X, y=None, **fit_params):
        """Fit the SelectFromModel meta-transformer only once.

        Parameters
        ----------
        X : array-like of shape (n_samples, n_features)
            The training input samples.

        y : array-like, shape (n_samples,)
            The target values (integers that correspond to classes in
            classification, real numbers in regression).

        **fit_params : Other estimator specific parameters

        Returns
        -------
        self : object
            Returns self.
        """
        if self.prefit:
            raise NotFittedError(
                "Since 'prefit=True', call transform directly")
        if not hasattr(self, "estimator_"):
            self.estimator_ = clone(self.estimator)
        self.estimator_.partial_fit(X, y, **fit_params)
        return self
