=head1 NAME

lapidary - Determine the read coverage and identity to a protein database using diamond

=head1 DESCRIPTION

Determine the read coverage and identity of reads from fastq files to a protein database using diamond and reports the output to a file

=head1 SYNOPSIS

  $ lapidary -read_1 Examples/Reads/Paired_reads_1.fq.gz -read_2 Examples/Reads/Paired_reads_2.fq.gz -read_type paired -db Examples/Amino_acid_database.fasta
...  
Total time = 5.668s
Reported 613 pairwise alignments, 613 HSPs.
613 queries aligned.

=head1 AUTHOR

Samuel Bloomfield

=head1 LICENSE

GPL_3

=head1 INSTALLATION

Using C<cpan>:

    $ cpan App::lapidary

Manual install:

    $ perl Makefile.PL
    $ make
    $ make install


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